Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02286 ATGATTTTTCCAAGATTTTGTACGAATCTAAAAGATTCAAATTGGTTTGTGCAAGAGAGCCAGAGCACAGAATGGAGCAGGGAAGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTTGCAGCCATGATCCCTGGGAAGACCGTGTTCGATGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTTGTTCACAACCACAACTATGATGGTTGCAGAAGAAGGCCTGCACCTGTCAGAGGTTCTGATCAAGAGAGAAAGAAAGGGGTTCCCTGGACTGAAGAAGAACACAGACGTTTTCTGATGGGACTTCTGAAGTATGGTAAAGGGGATTGGAGAAACATTTCTCGCAATTTTGTGGTGACAAAAACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGAAAAGATAAAAGGAGACCAAGCATCCATGACATAACCACTGTTAATCTTACAGAAACTGCTGCATCAGATAAGATCAAGTCTCCGTTATTTAACGTGTCGCCCATGAATAGTTTGTCAAAAGTCCAGTTGGACTGGACTAGCCACTGCAATGATGGATCACTCATGGTTTTCAACCCAAACAGTGACAACTTGTTTGTGTCGTCTTCGTCTGATATCACTTCCATGGCCCTGAAAATGCAGGGACAGGATCTCTATGACTGTGCTTTGCATGAGGCTTATGCCAAGGTAAAAGCCCCAGGTTTCGGCATGGCTCCCAGAGACTTCAATAATGAAGCTATTTTCGGTATTCACGCACTGTAG 891 0.4388 MIFPRFCTNLKDSNWFVQESQSTEWSREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVHNHNYDGCRRRPAPVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKIKSPLFNVSPMNSLSKVQLDWTSHCNDGSLMVFNPNSDNLFVSSSSDITSMALKMQGQDLYDCALHEAYAKVKAPGFGMAPRDFNNEAIFGIHAL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02286 296 SUPERFAMILY Homeodomain-like 23 77 IPR009057 -
Viun8g02286 296 ProSiteProfiles SANT domain profile. 20 75 IPR017884 -
Viun8g02286 296 SMART sant 21 73 IPR001005 -
Viun8g02286 296 SMART sant 121 171 IPR001005 -
Viun8g02286 296 CDD SANT 124 168 IPR001005 -
Viun8g02286 296 FunFam transcription factor MYB1R1 123 174 - -
Viun8g02286 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Viun8g02286 296 Gene3D - 17 84 - -
Viun8g02286 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Viun8g02286 296 SUPERFAMILY Homeodomain-like 119 173 IPR009057 -
Viun8g02286 296 CDD SANT 24 70 IPR001005 -
Viun8g02286 296 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Viun8g02286 296 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 18 244 IPR043363 -
Viun8g02286 296 Gene3D - 123 174 - -
Viun8g02286 296 FunFam Transcription factor SRM1 17 84 - -
Viun8g02286 296 Pfam Myb-like DNA-binding domain 124 168 IPR001005 -
Viun8g02286 296 ProSiteProfiles SANT domain profile. 125 173 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02286 Viun-Chr8 32876299 32878321 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun8g02286 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02286 - - ccaj:109813886 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03169 1 39742626 39744404 Viun8g02286 8 32876299 32878321 ECH
Viun5g01382 5 10560122 10562808 Viun8g02286 8 32876299 32878321 ECH
Viun8g02286 8 32876299 32878321 Viun8g02286 8 32876299 32878321 ECH
Viun1g03169 1 39742626 39744404 Viun8g02286 8 32876299 32878321 PCT