Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02285 ATGATTTTTCCAAGATTTTGTACGAATCTAAAAGGTATGGAATTGGAAACCCTGTACCCTCCTTGTTTTATGCCAGATTCAAATTGGTTTGTGCAAGAGAGCCAGAGCACAGAATGGAGCAGGGAAGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTTGCAGCCATGATCCCTGGGAAGACCGTGTTCGATGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTTGTTCACAACCACAACTATGATGGTTGCAGAAGAAGGCCTGCACCTGTCAGAGGTTCTGATCAAGAGAGAAAGAAAGGGGTTCCCTGGACTGAAGAAGAACACAGACGTTTTCTGATGGGACTTCTGAAGTATGGTAAAGGGGATTGGAGAAACATTTCTCGCAATTTTGTGGTGACAAAAACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGAAAAGATAAAAGGAGACCAAGCATCCATGACATAACCACTGTTAATCTTACAGAAACTGCTGCATCAGATAAGATCAAGTCTCCGTTATTTAACGTGTCGCCCATGAATAGTTTGTCAAAAGTCCAGTTGGACTGGACTAGCCACTGCAATGATGGATCACTCATGGTTTTCAACCCAAACAGTGACAACTTGTTTGTGTCGTCTTCGTCTGATATCACTTCCATGGCCCTGAAAATGCAGGGACAGGATCTCTATGACTGTGCTTTGCATGAGGCTTATGCCAAGGTAAAAGCCCCAGGTTTCGGCATGGCTCCCAGAGACTTCAATAATGAAGCTATTTTCGGTATTCACGCACTGTAG 933 0.4394 MIFPRFCTNLKGMELETLYPPCFMPDSNWFVQESQSTEWSREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVHNHNYDGCRRRPAPVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKIKSPLFNVSPMNSLSKVQLDWTSHCNDGSLMVFNPNSDNLFVSSSSDITSMALKMQGQDLYDCALHEAYAKVKAPGFGMAPRDFNNEAIFGIHAL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02285 310 CDD SANT 38 84 IPR001005 -
Viun8g02285 310 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Viun8g02285 310 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Viun8g02285 310 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Viun8g02285 310 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 32 258 IPR043363 -
Viun8g02285 310 Gene3D - 137 188 - -
Viun8g02285 310 SUPERFAMILY Homeodomain-like 37 91 IPR009057 -
Viun8g02285 310 FunFam Transcription factor SRM1 31 98 - -
Viun8g02285 310 SMART sant 35 87 IPR001005 -
Viun8g02285 310 SMART sant 135 185 IPR001005 -
Viun8g02285 310 ProSiteProfiles SANT domain profile. 34 89 IPR017884 -
Viun8g02285 310 Gene3D - 31 98 - -
Viun8g02285 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Viun8g02285 310 FunFam transcription factor MYB1R1 137 188 - -
Viun8g02285 310 CDD SANT 138 182 IPR001005 -
Viun8g02285 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Viun8g02285 310 Pfam Myb-like DNA-binding domain 138 182 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02285 Viun-Chr8 32876299 32878321 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun8g02285 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02285 - - ccaj:109813886 580.096