Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02270 ATGTTGGTCACTACTGAAGACAAGTCTCATGTTGTTGTCGTTGACATAGACAGTAATGGCTGTTGTCAACGGAGCTCCGCCGCCGACGAGGGGTGTTCTGACGCCGCCGACCGGTCGCATGAGGAGCAAAGGTCTTCCCATGATCCTGGCACTGAGATAGTGGGAGTGTGTGAGAAGGAGAGAGGATCCTCTGCTTCAGAGTGTTCGGTGGAGGTGGATCTGGAAGAGGGTTCAGTCCCTGAAGTTAAGGTGCATTTGGATAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGTATGGATATGACCAACCATGAATCTGGAACTCCCATTGAGCTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCAGAGGCTTGGTTCAAGATCAAGGGCAACAAAACATGTGAGATCTGTGGATCAATTGCACACAATGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAATGGAATGAGGGAAATGATAGTTCCGCGGCAGCAGCATCTGGAGCAGCAGCACCCACAGAAACTCGAAATTTCTGGCAGGGTCATCGTTTTTTGAATTTCCTGCTAGCATGTATGGTGTTTGCCTTTGTCATATCCTGGCTCTTTCACTTTAATGTACCCTCTTGA 651 0.4839 MLVTTEDKSHVVVVDIDSNGCCQRSSAADEGCSDAADRSHEEQRSSHDPGTEIVGVCEKERGSSASECSVEVDLEEGSVPEVKVHLDNVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGAIEIQMTEQWNEGNDSSAAAASGAAAPTETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02270 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 153 IPR013083 -
Viun8g02270 216 Pfam RING-variant domain 93 144 IPR011016 GO:0008270
Viun8g02270 216 SUPERFAMILY RING/U-box 90 147 - -
Viun8g02270 216 PANTHER ZINC FINGER, RING-CH-TYPE 20 215 - -
Viun8g02270 216 SMART ringv_2 92 145 IPR011016 GO:0008270
Viun8g02270 216 MobiDBLite consensus disorder prediction 32 48 - -
Viun8g02270 216 ProSiteProfiles Zinc finger RING-CH-type profile. 85 151 IPR011016 GO:0008270
Viun8g02270 216 MobiDBLite consensus disorder prediction 32 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02270 Viun-Chr8 32781304 32784369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02270 33 216 C3H Transcription Factor Family AT5G05830 62.162 1.01e-74 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02270 - - gmx:100818979 362.073