LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g02259	ATGATTTCTTTAAGGCTTAGCCTTCTTTTAACACTCATCTTCAGTCTGATAATTAATCAGACATATTCCGAGAAAGATAGAAAGACTTACATTGTCTACATGGGTGACCACCCTAAGGGCATGGACTCCACATCCTTACCTTCTCTTCATATGACCATGGCACAAAAAGTTCTTGGCAGCGACTTTGAACCAAAAGCTATACTTCATAGTTACAAGAAAAGCTTTAATGGATTTGTTATCAAGTTAACGCAAGAGGAAGCGGGAAGAATGGCAGAAATGGACAGTGTTGTCTCTGTTTTCCCAAACAAGAAGAGTCATCCGCACACAACTAGATCATGGGACTTCATAGGCCTTTCACAGAAAATCCTAAGAACAAGTTTTGAGAGTGACATAATTGTTGGAGTAATAGACACAGGAGTTTGGCCAGAGTCGAAGAGCTTCAGTGACGAAGGATTTGGTCCTCCACCAACCAAATGGAAGGGATCATGCCACAACTTTACTTGCAACAACAAAATAATTGGAGCAAAGTATATCAACATTGAAGGTGACTATGGAAAAGACGATATCATATCTCCGAGAGATGCACAAGGCCACGGGTCACACACTGCATCAACAATTGCTGGAAATTTGGTTAAGTCTGCGAGTCTACTAGGCTTTGCCTCAGGAACAGCACGTGGAGGAGTTCCATCAGCACGCATTGCAATATACAAAACATGTTGGCTCAAAATAGGTTGTCCCGCAGCTGAAACCCTAGCAGCATTTGATGAAGCAATTGCTGATGGAGTTGATATAATCTCCATTTCAACCGGCTACAACAACATAGAGATACATCCCTATTTCCAAAGTGCGTATGATATAGGAAGTTTCCATGCAATGAAGAGAGGCATATTAACGTCAAATTCAGCCAATAATTTGGGTCCTCGATTTTCCTCTATGACCACTTACCCACCTTGGATACTCTCTGTAGCTGCTAGCACCATTGACAGAAAGTTCCTCACCAAAGTGCAATTGGGCAATGGCATAGTTCTTGAGGGGGTTACAATTAACACTTTTGATCTAAAAAACAAAATGTTTCCACTGATATACGCCGGAGATGTACCAAATACTGCGGACGGATACAATAGTTCCGAATCCAGGTTTTGCTCCGACGGCACTGTGGATAAACATTTAGTAAAAGGAAAGATCGTTCTGTGTGACAGAATTACGTCTCCTAGCGATGTGGGGGTTTTGTCTGGGGCTGCTGGGATTCTTGTTGGAGCCACTGATCCAAAAGATGGGCCAACAACATATGCACTACCCGCAGCTTTCATTAGTCTAAGGAACTTTAACCTCGTACATTCTTACATGATTTCATCGAGAAATTCAACTGCTACAATATTCAGGAGTGACGAAGACAATGACTCACAAACCCCTTTCGTAGTTTCGTTTTCATCAAGAGGTCCAAATCCAATTACGCCAAACACTCTCAAGCCTGATCTTGCTGCTCCGGGCGTTAACATTCTAGCTGCATGGTCTCCACTGTATCCAATTTCAACATTTAAAGGTGACAAAAGAGCAGTGCAATACAACATAGAGTCTGGCACTTCAATGGCTTGCCCTCATGCAGCTGCATCTGCTGCATATGTCAAATCTTTTCACCCCAATTGGTCCCCTGCTATGATCAAGTCTGCATTAATGACCACAGCTACACCAATGAGTCCTACTCTTAATCCTGAAGCTGAATTTGCATATGGTGCGGGACAAGTTAATCCTATTAAAGCAGTAAATCCTGGTTTAGTGTACGATATTGGTGAAGCAGATTATGTGAAGTTCTTGTGTGGAGAGGGTTATACAGATAAAATGCTTCGAATACTCACTACAGATCATAGCAGATGTAGTAAACATGCCAAGAAAGAAGCTGTGTATGACCTCAATCTCCCATCATTTGCTCTGTACGTAAATGTCTCATCTTTCAGTCGTGTTTATCATAGAACGGTTACAAATGTGGGATCAGAAAGGTCTCGTTACAGAGCCAAAGTGGTATCACCATCTTTGCTGGATATTCAGGTGAAACCAAATGTTCTATCCTTCACATCAATTGGACAGAAGAAGTCATTCTCAGTGATAATTGAAGGGAGTGTTAATGCAGATATACTCTCTGCCTCTCTGGTTTGGGATGATGGCACTTTTCAAGTTAGAACACCAATTGTAGTATATACTGATCGAAAAGTTATTTCATTGTCTGCATAA	2229	0.4159	MISLRLSLLLTLIFSLIINQTYSEKDRKTYIVYMGDHPKGMDSTSLPSLHMTMAQKVLGSDFEPKAILHSYKKSFNGFVIKLTQEEAGRMAEMDSVVSVFPNKKSHPHTTRSWDFIGLSQKILRTSFESDIIVGVIDTGVWPESKSFSDEGFGPPPTKWKGSCHNFTCNNKIIGAKYINIEGDYGKDDIISPRDAQGHGSHTASTIAGNLVKSASLLGFASGTARGGVPSARIAIYKTCWLKIGCPAAETLAAFDEAIADGVDIISISTGYNNIEIHPYFQSAYDIGSFHAMKRGILTSNSANNLGPRFSSMTTYPPWILSVAASTIDRKFLTKVQLGNGIVLEGVTINTFDLKNKMFPLIYAGDVPNTADGYNSSESRFCSDGTVDKHLVKGKIVLCDRITSPSDVGVLSGAAGILVGATDPKDGPTTYALPAAFISLRNFNLVHSYMISSRNSTATIFRSDEDNDSQTPFVVSFSSRGPNPITPNTLKPDLAAPGVNILAAWSPLYPISTFKGDKRAVQYNIESGTSMACPHAAASAAYVKSFHPNWSPAMIKSALMTTATPMSPTLNPEAEFAYGAGQVNPIKAVNPGLVYDIGEADYVKFLCGEGYTDKMLRILTTDHSRCSKHAKKEAVYDLNLPSFALYVNVSSFSRVYHRTVTNVGSERSRYRAKVVSPSLLDIQVKPNVLSFTSIGQKKSFSVIIEGSVNADILSASLVWDDGTFQVRTPIVVYTDRKVISLSA	742

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g02259	742	CDD	PA_subtilisin_like	335	459	-	-
	Viun8g02259	742	PRINTS	Subtilisin serine protease family (S8) signature	526	542	IPR015500	-
	Viun8g02259	742	PRINTS	Subtilisin serine protease family (S8) signature	194	207	IPR015500	-
	Viun8g02259	742	PRINTS	Subtilisin serine protease family (S8) signature	128	147	IPR015500	-
	Viun8g02259	742	Pfam	Subtilase family	129	580	IPR000209	GO:0006508\|GO:0008236
	Viun8g02259	742	ProSitePatterns	Serine proteases, subtilase family, serine active site.	527	537	IPR023828	-
	Viun8g02259	742	Pfam	Fibronectin type-III domain	636	731	IPR041469	-
	Viun8g02259	742	Pfam	Peptidase inhibitor I9	29	105	IPR010259	-
	Viun8g02259	742	ProSiteProfiles	Serine proteases, subtilase domain profile.	112	588	-	-
	Viun8g02259	742	Gene3D	-	605	734	-	-
	Viun8g02259	742	Gene3D	Peptidase S8/S53 domain	130	601	IPR036852	GO:0004252\|GO:0006508
	Viun8g02259	742	Gene3D	-	328	466	-	-
	Viun8g02259	742	CDD	Peptidases_S8_3	106	563	IPR034197	-
	Viun8g02259	742	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	15	108	IPR037045	-
	Viun8g02259	742	SUPERFAMILY	Subtilisin-like	107	592	IPR036852	GO:0004252\|GO:0006508
	Viun8g02259	742	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	30	731	IPR045051	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g02259	Viun-Chr8	32679684	32683029	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g02259	26	732	Subtilisin-like Serine Gene Family	AT5G59100	46.667	0.0	628

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g02259	-		-	gmx:100787973	1254.58