Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02252 ATGGCAACTCTAGGAAGAATAAGAGGGTACGACGTTTGGTTGAGAACAGGAGATGATGAAGTGAAGGTCAAAGTGAGTGACATTTTAAGGATTGATGTAACTATTGGTGTTCGATATATACATTCTGTTCATAGCATTGAAACAACCTTATTAAAAGAGTCGATATCCATTAGCTGTCAGAATTTCATCCAAAATAATCAAGATTTCTTAAGGAGCTTCATGTTCGACCCACGCTGCTCTACCTCCTTCAGTCCAGCAAGTATTGATCTTTATCGTTTGTCAGAAGAAATTGTTGATATGAGTATAAATATCATAGAATTTGGATGTGATTCAGAGTATGTAGATTCAAAATGTCAGGAATTACCTTTGAAATTTGACATCACGGTGGAAATACTTCCTCCAGGAGAAACAACAATGATTCCACCATCTAAAGGAGCCATTGATTCCCTCAACACGTTCACACCTTCATCTTCTTTAAGAGAGGGAACTCAGAACTGCAGCATTTGCATGGAAGATTTGTGTTTCAGAGAGAAGTTATTGTCGATGCCTTGTAACCACGTTTTCCATCATCTGTGTATTGTAGAGTGGCTCAAGATTAGTCGCACTTGTCCCTTATGTCGTTATCCTATACCTCATTTGTAA 642 0.3801 MATLGRIRGYDVWLRTGDDEVKVKVSDILRIDVTIGVRYIHSVHSIETTLLKESISISCQNFIQNNQDFLRSFMFDPRCSTSFSPASIDLYRLSEEIVDMSINIIEFGCDSEYVDSKCQELPLKFDITVEILPPGETTMIPPSKGAIDSLNTFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCRYPIPHL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02252 213 SUPERFAMILY RING/U-box 146 211 - -
Viun8g02252 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 212 IPR013083 -
Viun8g02252 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 210 - -
Viun8g02252 213 SMART ring_2 166 206 IPR001841 -
Viun8g02252 213 ProSiteProfiles Zinc finger RING-type profile. 166 207 IPR001841 -
Viun8g02252 213 Pfam Ring finger domain 165 207 IPR001841 -
Viun8g02252 213 CDD RING-H2_PA-TM-RING 166 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02252 Viun-Chr8 32562143 32562784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02252 113 211 C3H Transcription Factor Family AT5G15820 31.068 8.48e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02252 - - vun:114195127 440.654