Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02241 ATGGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTGAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAAGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAGTTGGGGAGAAGACACTGGAGACGATTACTCAAAGGCACCTTTGGATACCCTTAGTTCATCTACACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGTTTGTCATTGAACAGAAGAACATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACATATTTTCATCCAAATTGCTTTCGCTGTCATTCATGTCGGTACCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATAAATGCAGCTGGGTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAACACAGCTCGTTGCTGTAGCTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGAAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTCAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCGGAAACAAGGGGTTTGTGCCTCTCAGAGGAGCAGACTGTCACTAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTTTATGGTCTTCCTAGGTTACTCACTGGTGCCATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGAAACCTTAACCCTGAAGTTGAGGAAGGTATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCTTCTTCCTCTTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCTGCTTATGGTGGTGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1485 0.4202 MGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTGDDYSKAPLDTLSSSTHPPFAPTPFYPHEYSLSLNRRTCGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02241 494 SMART lim_4 131 183 IPR001781 -
Viun8g02241 494 FunFam Protein DA1-related 2 119 185 - -
Viun8g02241 494 CDD LIM_DA1 132 184 - -
Viun8g02241 494 ProSitePatterns LIM zinc-binding domain signature. 132 166 IPR001781 -
Viun8g02241 494 Pfam Protein DA1 281 488 IPR022087 -
Viun8g02241 494 Pfam LIM domain 132 185 IPR001781 -
Viun8g02241 494 PANTHER PROTEIN DA1-RELATED 2 16 493 IPR045218 -
Viun8g02241 494 ProSiteProfiles LIM domain profile. 130 190 IPR001781 -
Viun8g02241 494 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 157 - -
Viun8g02241 494 Gene3D Cysteine Rich Protein 126 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02241 Viun-Chr8 32510859 32515169 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g02241 DA1-like 1.8e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02241 - - gmx:100784976 967.222