Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02240 ATGGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTGAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAAGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGCATCGAGTGCAGCGAAACTTGTACTTGAACTACATCGAATCTCAGAGCACTTTTTTGGAATTTTGCAATGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAGTTGGGGAGAAGACACTGGAGACGATTACTCAAAGGCACCTTTGGATACCCTTAGTTCATCTACACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGTTTGTCATTGAACAGAAGAACATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACATATTTTCATCCAAATTGCTTTCGCTGTCATTCATGTCGGTACCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATAAATGCAGCTGGGTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAACACAGCTCGTTGCTGTAGCTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGAAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTCAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCGGAAACAAGGGGTTTGTGCCTCTCAGAGGAGCAGACTGTCACTAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTTTATGGTCTTCCTAGGTTACTCACTGGTGCCATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGAAACCTTAACCCTGAAGTTGAGGAAGGTATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCTTCTTCCTCTTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCTGCTTATGGTGGTGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1554 0.4189 MGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALHRVQRNLYLNYIESQSTFLEFCNDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTGDDYSKAPLDTLSSSTHPPFAPTPFYPHEYSLSLNRRTCGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02240 517 Pfam LIM domain 155 208 IPR001781 -
Viun8g02240 517 ProSiteProfiles LIM domain profile. 153 213 IPR001781 -
Viun8g02240 517 PANTHER PROTEIN DA1-RELATED 2 18 516 IPR045218 -
Viun8g02240 517 SMART lim_4 154 206 IPR001781 -
Viun8g02240 517 FunFam Protein DA1-related 2 142 208 - -
Viun8g02240 517 Pfam Protein DA1 304 511 IPR022087 -
Viun8g02240 517 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 180 - -
Viun8g02240 517 CDD LIM_DA1 155 207 - -
Viun8g02240 517 ProSitePatterns LIM zinc-binding domain signature. 155 189 IPR001781 -
Viun8g02240 517 Gene3D Cysteine Rich Protein 149 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02240 Viun-Chr8 32510858 32515169 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g02240 DA1-like 2e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02240 - - gmx:100784976 954.125