Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02239 ATGCCCCTTCTTCTCCATCTCTCTGTCATTTTCATTCCTCTTCCTCATCTTCTCTCTCACAACATTGCTTTTTTCCTCCTTATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTGAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAAGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAGTTGGGGAGAAGACACTGGAGACGATTACTCAAAGGCACCTTTGGATACCCTTAGTTCATCTACACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAACATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACATATTTTCATCCAAATTGCTTTCGCTGTCATTCATGTCGGTACCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATAAATGCAGCTGGGTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAACACAGCTCGTTGCTGTAGCTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGAAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTCAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCGGAAACAAGGGGTTTGTGCCTCTCAGAGGAGCAGACTGTCACTAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTTTATGGTCTTCCTAGGTTACTCACTGGTGCCATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGAAACCTTAACCCTGAAGTTGAGGAAGGTATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCTTCTTCCTCTTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCTGCTTATGGTGGTGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1596 0.4217 MPLLLHLSVIFIPLPHLLSHNIAFFLLMAPSSDVNHLSHPCIYGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTGDDYSKAPLDTLSSSTHPPFAPTPFYPHEYRRTCGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02239 531 ProSitePatterns LIM zinc-binding domain signature. 169 203 IPR001781 -
Viun8g02239 531 Pfam LIM domain 169 222 IPR001781 -
Viun8g02239 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 194 - -
Viun8g02239 531 CDD LIM_DA1 169 221 - -
Viun8g02239 531 Gene3D Cysteine Rich Protein 156 226 - -
Viun8g02239 531 ProSiteProfiles LIM domain profile. 167 227 IPR001781 -
Viun8g02239 531 PANTHER PROTEIN DA1-RELATED 2 60 530 IPR045218 -
Viun8g02239 531 SMART lim_4 168 220 IPR001781 -
Viun8g02239 531 FunFam Protein DA1-related 2 157 222 - -
Viun8g02239 531 Pfam Protein DA1 318 525 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02239 Viun-Chr8 32510440 32515169 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g02239 DA1-like 2.1e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02239 - - gmx:100784976 1008.44