Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02238 ATGCCCCTTCTTCTCCATCTCTCTGTCATTTTCATTCCTCTTCCTCATCTTCTCTCTCACAACATTGCTTTTTTCCTCCTTATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTGAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAAGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAGTTGGGGAGAAGACACTGGAGACGATTACTCAAAGGCACCTTTGGATACCCTTAGTTCATCTACACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGTTTGTCATTGAACAGAAGAACATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACATATTTTCATCCAAATTGCTTTCGCTGTCATTCATGTCGGTACCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATAAATGCAGCTGGGTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAACACAGCTCGTTGCTGTAGCTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGAAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTCAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCGGAAACAAGGGGTTTGTGCCTCTCAGAGGAGCAGACTGTCACTAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTTTATGGTCTTCCTAGGTTACTCACTGGTGCCATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGAAACCTTAACCCTGAAGTTGAGGAAGGTATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCTTCTTCCTCTTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCTGCTTATGGTGGTGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1611 0.4209 MPLLLHLSVIFIPLPHLLSHNIAFFLLMAPSSDVNHLSHPCIYGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTGDDYSKAPLDTLSSSTHPPFAPTPFYPHEYSLSLNRRTCGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02238 536 CDD LIM_DA1 174 226 - -
Viun8g02238 536 PANTHER PROTEIN DA1-RELATED 2 60 535 IPR045218 -
Viun8g02238 536 SMART lim_4 173 225 IPR001781 -
Viun8g02238 536 ProSiteProfiles LIM domain profile. 172 232 IPR001781 -
Viun8g02238 536 ProSitePatterns LIM zinc-binding domain signature. 174 208 IPR001781 -
Viun8g02238 536 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 199 - -
Viun8g02238 536 FunFam Protein DA1-related 2 161 227 - -
Viun8g02238 536 Pfam Protein DA1 323 530 IPR022087 -
Viun8g02238 536 Gene3D Cysteine Rich Protein 168 233 - -
Viun8g02238 536 Pfam LIM domain 174 227 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02238 Viun-Chr8 32510436 32515169 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g02238 DA1-like 2.2e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02238 - - gmx:100784976 1002.28