Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02236 ATGCCCCTTCTTCTCCATCTCTCTGTCATTTTCATTCCTCTTCCTCATCTTCTCTCTCACAACATTGCTTTTTTCCTCCTTATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTGAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAAGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGCATCGAGTGCAGCGAAACTTGTACTTGAACTACATCGAATCTCAGAGCACTTTTTTGGAATTTTGCAATGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAGTTGGGGAGAAGACACTGGAGACGATTACTCAAAGGCACCTTTGGATACCCTTAGTTCATCTACACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGTTTGTCATTGAACAGAAGAACATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACATATTTTCATCCAAATTGCTTTCGCTGTCATTCATGTCGGTACCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATAAATGCAGCTGGGTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAACACAGCTCGTTGCTGTAGCTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGAAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTCAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCGGAAACAAGGGGTTTGTGCCTCTCAGAGGAGCAGACTGTCACTAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTTTATGGTCTTCCTAGGTTACTCACTGGTGCCATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGAAACCTTAACCCTGAAGTTGAGGAAGGTATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCTTCTTCCTCTTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCTGCTTATGGTGGTGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1680 0.4196 MPLLLHLSVIFIPLPHLLSHNIAFFLLMAPSSDVNHLSHPCIYGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALHRVQRNLYLNYIESQSTFLEFCNDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTGDDYSKAPLDTLSSSTHPPFAPTPFYPHEYSLSLNRRTCGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02236 559 Pfam LIM domain 197 250 IPR001781 -
Viun8g02236 559 Pfam Protein DA1 346 553 IPR022087 -
Viun8g02236 559 ProSitePatterns LIM zinc-binding domain signature. 197 231 IPR001781 -
Viun8g02236 559 Gene3D Cysteine Rich Protein 191 256 - -
Viun8g02236 559 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 222 - -
Viun8g02236 559 PANTHER PROTEIN DA1-RELATED 2 60 558 IPR045218 -
Viun8g02236 559 SMART lim_4 196 248 IPR001781 -
Viun8g02236 559 CDD LIM_DA1 197 249 - -
Viun8g02236 559 ProSiteProfiles LIM domain profile. 195 255 IPR001781 -
Viun8g02236 559 FunFam Protein DA1-related 2 184 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02236 Viun-Chr8 32510431 32515343 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g02236 DA1-like 2.4e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02236 - - gmx:100784976 989.178