Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02235 ATGAGCTCGCAGGGGCAAGGGATTGATGAAGCGGTTCTGGATGACATAATCCGCCGCTTAACTGAGGTCCGATTGGCCCGACCCGGCAAGCAGGTTCAGCTCTCCGAGTCAGAGATCAAGCAACTCTGCGTCGCTTCTCGAGACATCTTCATTAACCAACCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGCGGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGGGTTTGCCTCCTAAGGCAAATTATCTCTTTTTGGGGGACTATGTGGACCGTGGGAAGCAGAGCTTAGAAACCATATGTCTTTTGCTTGCATATAAAATCAAATATCCCGAAAACTTTTTCCTGTTGAGGGGGAATCATGAGTGTGCTTCCATTAATAGGATTTATGGGTTTTATGATGAATGTAAGAGAAGGTTTAATGTGAGGCTTTGGAAAGCCTTCACCGAATGTTTTAACTGCCTTCCTGTGGCTGCCCTAATAGATGATAAAATATTGTGCATGCATGGTGGTCTTTCCCCTGAACTCACAAACTTGGATGAAATCAGGAATATAATCCGTCCTACTGCAATTCCCGACACTGGCTTGCTCTGTGATTTGCTTTGGTCTGATCCTGGTAGGGATGTGAAGGGTTGGGGAATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCTGATAAGGTGGCTGAATTTTTGACAAAGCATGACTTGGATCTCATTTGTCGTGCTCATCAGGTTGTAGAGGATGGGTATGAATTCTTCGCTGACAGGCAACTTGTTACGATATTTTCAGCTCCAAACTACTGTGGTGAATTTGACAATGCTGGTGCAATGATGAGTGTGGATGATAACTTGATGTGCTCTTTTCAGATTCTGAAGCCTGCAGAGAAAAAAACAAAGTTTGTGATGTCAAACAAGATATGA 948 0.443 MSSQGQGIDEAVLDDIIRRLTEVRLARPGKQVQLSESEIKQLCVASRDIFINQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPKANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTECFNCLPVAALIDDKILCMHGGLSPELTNLDEIRNIIRPTAIPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDDNLMCSFQILKPAEKKTKFVMSNKI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02235 315 CDD MPP_PP1_PPKL 12 302 - -
Viun8g02235 315 ProSitePatterns Serine/threonine specific protein phosphatases signature. 125 130 IPR006186 GO:0016787
Viun8g02235 315 Pfam Calcineurin-like phosphoesterase 62 254 IPR004843 GO:0016787
Viun8g02235 315 Gene3D - 6 313 IPR029052 -
Viun8g02235 315 PRINTS Serine/threonine phosphatase family signature 91 118 IPR006186 GO:0016787
Viun8g02235 315 PRINTS Serine/threonine phosphatase family signature 187 214 IPR006186 GO:0016787
Viun8g02235 315 PRINTS Serine/threonine phosphatase family signature 62 89 IPR006186 GO:0016787
Viun8g02235 315 PRINTS Serine/threonine phosphatase family signature 158 184 IPR006186 GO:0016787
Viun8g02235 315 PRINTS Serine/threonine phosphatase family signature 244 264 IPR006186 GO:0016787
Viun8g02235 315 PRINTS Serine/threonine phosphatase family signature 124 148 IPR006186 GO:0016787
Viun8g02235 315 PRINTS Serine/threonine phosphatase family signature 266 282 IPR006186 GO:0016787
Viun8g02235 315 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 16 307 - -
Viun8g02235 315 SMART pp2a_7 34 304 IPR006186 GO:0016787
Viun8g02235 315 FunFam Serine/threonine-protein phosphatase 60 313 - -
Viun8g02235 315 Pfam Serine-threonine protein phosphatase N-terminal domain 13 60 IPR031675 -
Viun8g02235 315 SUPERFAMILY Metallo-dependent phosphatases 23 308 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02235 Viun-Chr8 32488417 32492987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02235 63 250 Calmodulin-binding Proteins AT5G63870 32.589 4.88e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02235 K06269 - gmx:100807069 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02235 8 32488417 32492987 Viun8g02235 8 32488417 32492987 ECH