Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02218 ATGATGAAGTCACAGTCAGAGGTTGATAATGCAGTAATTATTGGAGATGACAGAAAGAACAATTGGGAAGAAAGGGGTTTTGCAGAAGACGCAGCTGCTAGCATGTGGCCTCCAAGACCTTACTCTTGCACCTTTTGCAAGAGAGAGTTCAGGTCTGCACAAGCTCTTGGGGGTCACATGAATATTCACAGAAGGGACAAGGCTAGGCTCAAACAAAACCCTAACCCTCATCATCACAATTATCAACCCTTTTACCATCACACCATCAAACCCTTATTAGGTAATCATAATCATCATCGTTTTTCTGCACCACTCTTCTCCACCCAGATAAACTGTGGTATCACTCATTCTCATAGCTATTCTAGTCAAGCAACTACAATTTCAACAACCAGATCAATCTCACAAGAAAATAAATTTTCACACACCTCTTCTTCTTCATTTATCTTTCGACAAATGGGGTCTCCCAATTCAGAACAAGAAAAGGAGTACAGTTTCGGAGGCTTGGAATGTGGTAATTTTGTTGAAACAAGTTTGTCTCAAAATTCATCACCTTGTTGGGACAGACCAAACATGAGTTGCAAGAGACTGAAAAACAGCATTTGTTCTCTTCCTCTTTTCCTCAGACCATGTTCAAAGGACAAAGGCCTGGCTCTTCAACCTGTGGAAATCCCACTGGGGCTTCATCACAGAATCGAAGACTTGGATCTTGAACTCAGGCTAGGGAAACAACAGAAAGTTGAGTAG 744 0.4167 MMKSQSEVDNAVIIGDDRKNNWEERGFAEDAAASMWPPRPYSCTFCKREFRSAQALGGHMNIHRRDKARLKQNPNPHHHNYQPFYHHTIKPLLGNHNHHRFSAPLFSTQINCGITHSHSYSSQATTISTTRSISQENKFSHTSSSSFIFRQMGSPNSEQEKEYSFGGLECGNFVETSLSQNSSPCWDRPNMSCKRLKNSICSLPLFLRPCSKDKGLALQPVEIPLGLHHRIEDLDLELRLGKQQKVE 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02218 247 Gene3D Classic Zinc Finger 37 88 - -
Viun8g02218 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Viun8g02218 247 SMART c2h2final6 41 63 IPR013087 -
Viun8g02218 247 Pfam C2H2-type zinc finger 41 65 - -
Viun8g02218 247 SUPERFAMILY beta-beta-alpha zinc fingers 38 68 IPR036236 -
Viun8g02218 247 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Viun8g02218 247 PANTHER OS07G0101800 PROTEIN 17 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02218 Viun-Chr8 32396142 32396885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02218 17 72 C2H2 Transcription Factor Family AT2G37740 70.175 1.75e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun8g02218 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02218 - - vun:114195124 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01517 5 12292918 12294246 Viun8g02218 8 32396142 32396885 ECH
Viun8g02218 8 32396142 32396885 Viun8g02218 8 32396142 32396885 ECH
Viun1g03107 1 39354911 39356163 Viun8g02218 8 32396142 32396885 PCT