Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02214 ATGGCGAACCGTTGGTGGACCGGGAACGTGGCGGTGAGACCCAATGATCCCAACTCATCGCTTCAGCCCAGAGAGCAAGACAGCGGCGACAACGCCAACAACGCTACTCCGACCAACAGCGGCAACAGTAACACCAACGTCAACCCTGGGGAGGACGACGACAACCCCGCCAACAACAACGACGGCGACGAGCAGAACCTTAGCAGCGGGCGGCGGCCCAGGGGCAGGCCGCCGGGGTCGAAGAACAAGCCGAAGCCGCCGGTGGTGATAACGAAGGAGAGCCCCAACGCGCTGCGCAGCCACATCCTCGAAATCAGCGGAGGCAGCGACGTGGCGGAGTGCATTGCCACCTTCGCCACGCGCCGCCACCGCGGCGTGTCTGTGCTCAGCGGCAACGGCGTCGTCACCAACGTCACGCTGCGCCAGCCCGCCGCTCCCGGTGGCGTCATCACGCTGCAGGGGAGGTTCGAGATTCTCTCCCTCTCCGGCGCGTTTCTGCCGGCGCCGTCCCCGCCGGAGGCCACCGGACTAACCGTGTACCTCGCCGGAGGGCAGGGGCAGGTCGTCGGCGGAAGCGTGGTGGGGCCCCTTGTCGCCTCGGGAGCCGTGATGGTTGTGGCTGCCACCTTCGCTAATGCTACCTATGAGAGATTGCCCTTGGAGGATGAACAAGGCGAAGAGGACATGCAAGAGGTGAATGAAGGTGGTGGCGGCGGAACTCCACCACCTTCTCAGGGTGATCAGCCGCCACAAGTTCCAATGCCGGTGTATAATTTGGTCCCTAACAATGGTGACGTGTTCTGGGGACCCCCACCTCGTCCTCCTCCACCTTCAAATTATTGA 843 0.6358 MANRWWTGNVAVRPNDPNSSLQPREQDSGDNANNATPTNSGNSNTNVNPGEDDDNPANNNDGDEQNLSSGRRPRGRPPGSKNKPKPPVVITKESPNALRSHILEISGGSDVAECIATFATRRHRGVSVLSGNGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPEATGLTVYLAGGQGQVVGGSVVGPLVASGAVMVVAATFANATYERLPLEDEQGEEDMQEVNEGGGGGTPPPSQGDQPPQVPMPVYNLVPNNGDVFWGPPPRPPPPSNY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02214 280 CDD DUF296 99 182 IPR005175 -
Viun8g02214 280 MobiDBLite consensus disorder prediction 1 95 - -
Viun8g02214 280 MobiDBLite consensus disorder prediction 12 66 - -
Viun8g02214 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 269 IPR014476 GO:0003680
Viun8g02214 280 MobiDBLite consensus disorder prediction 218 280 - -
Viun8g02214 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Viun8g02214 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 223 - -
Viun8g02214 280 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Viun8g02214 280 Gene3D - 98 231 - -
Viun8g02214 280 FunFam AT-hook motif nuclear-localized protein 98 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02214 Viun-Chr8 32356032 32357705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02214 1 262 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 54.340 1.28e-73 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02214 - - aprc:113874473 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03103 1 39336721 39339407 Viun8g02214 8 32356032 32357705 PCT