Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02213 ATGACAGGGTTTGGTTCAACATCGTGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCACCAGTGATTGTGTATTTGCTCCTTACTTTTCCTACGACCAAGCTTCAACCCATTTTGCAGCAGTGCATAAGATTTATGGAGCCAGTAACGTCTCCAAGCTACTGTCACATCTCCCAATCCAGAATAGAAGAGATGCTGCCATCACCATATCTTACGAAGCCTTGGCTCGCATGCATGATCCTATTTATGGCTGTGTCGCTCATATCTATGCATTGCAGCAACAGGTTGTGAACTTGCAAGAGGAGATAGATGCTCTTGGAAGCATGGTGGCAAAGTCCACAGTTAGTGTTGTGAATTCTGGCACTGTCCAAATGTACTCAGAAAACGGAATTCCTTATGATACTTTGCAGCATGATGGTAGAAGGACACAGTATTTTGAAAATAATAATGTGGCAAACTTTCTTTCAGAAGATGATGGAAGTGGCAGAGTCTTGCAAAGTTTGGAGTCACAGATGAATATAGAGCTTCCTAATGCACACGTGCAAGAAGAAGCTTCCTTTGGTGATTCCAACTCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTGTTCGTGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGGGCTAG 663 0.4299 MTGFGSTSCGACKFLRRKCTSDCVFAPYFSYDQASTHFAAVHKIYGASNVSKLLSHLPIQNRRDAAITISYEALARMHDPIYGCVAHIYALQQQVVNLQEEIDALGSMVAKSTVSVVNSGTVQMYSENGIPYDTLQHDGRRTQYFENNNVANFLSEDDGSGRVLQSLESQMNIELPNAHVQEEASFGDSNSNPLEQFLSGIDQEVFVNHPWFKHNADIKG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02213 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 149 - -
Viun8g02213 220 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Viun8g02213 220 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02213 Viun-Chr8 32339980 32341148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02213 1 131 AS2 family AT5G06080 65.649 3.58e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun8g02213 LOB 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02213 K13945 - gmx:100787638 314.309