Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02206 ATGGCTTCCCATTGGTGTTTCCGGTGCAACAAATACGTCAGAGTATGGAGACAGGAAATGCCGATGTGTCCAGAATGTGACAGTGGATTCGTCGAAGAGATCGAATCTTCCAGCCGCCCCGTCCATGTCGAACCGCGCCGCCGTAGGTTCCCCACGGCGGCGGCAATGTACATGATCGGCCACCGATCCGGTAATTCCGACCAAAATCCCCGTTCCTCTCGCCATCAACAACATTGCAGAACAGCCACCGGCGACCCGTCTGCGATCAACCCGGTTATCATGCTCCGCGGCGAGGGATCAAGCCACGAACGTGGCTCAAGCTTCGACCTTTTCTACGACGATGGCGCCGGTACGGGTCTACGACCACTCCCTCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGCTTCGACCGTGTGATGGACCAACTTTCCAACGTGGAGTCAAACTCCGGGTCTGGGAGGCACGACAACCACCACGCGCCGGCGTCTAAAGCTGCCGTGGATGCCTTGCCGGAGATTGAGATAAACGCGTCGCACATGGTGACTGAGTCACACTGCGCGGTCTGCAAGGAGCCTTTTGAGCTTTGCACCAGAGCGAGAGAAATGCCATGCAAACACATATACCATCCAGAATGCATCTTACCGTGGCTCGCGATTCGGAACTCATGCCCGGTGTGCCGCAAACAGTTGCCTGTTGAGAACGCACGTGCGGGGTTGGAGCGTGTGGAGGAGCAAGTAGAGAACAACGTGGGGTTGACAATTTGGCGGCTACCGGGCGGAGGGTTTGCCGTGGGAAGGTTGGGGAGAAGAGAGGGTGAGAGAGAGGTTAACGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTCAACTTTAACAACATTGTTATGGGCGAACCCAGAAGGATTTCATGGTCGGTTTCGGAGTCTCGAGGGAGAAGAAGAGGTGGCACGTTTAGAAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGTGTTGGGCCTCAACGTTCTTCTAGTTCTGGTTCTTCGAGAAGCGCGACGAGTACCAGTGTTAGGGCTTCGCGTCCTAACATGGGTCCTAACATGGGTCCTTCTTCATCTACGCGTAGGTCTTGGTCAATGGATGTGAATGGTGGAACCAGACCATGGTAA 1158 0.5484 MASHWCFRCNKYVRVWRQEMPMCPECDSGFVEEIESSSRPVHVEPRRRRFPTAAAMYMIGHRSGNSDQNPRSSRHQQHCRTATGDPSAINPVIMLRGEGSSHERGSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFDRVMDQLSNVESNSGSGRHDNHHAPASKAAVDALPEIEINASHMVTESHCAVCKEPFELCTRAREMPCKHIYHPECILPWLAIRNSCPVCRKQLPVENARAGLERVEEQVENNVGLTIWRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGFNFNNIVMGEPRRISWSVSESRGRRRGGTFRRMFNGLFSCLRGGGVGPQRSSSSGSSRSATSTSVRASRPNMGPNMGPSSSTRRSWSMDVNGGTRPW 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02206 385 SMART ring_2 186 226 IPR001841 -
Viun8g02206 385 MobiDBLite consensus disorder prediction 334 377 - -
Viun8g02206 385 MobiDBLite consensus disorder prediction 333 385 - -
Viun8g02206 385 Pfam Protein of unknown function (DUF1117) 250 354 IPR010543 -
Viun8g02206 385 SUPERFAMILY RING/U-box 166 232 - -
Viun8g02206 385 MobiDBLite consensus disorder prediction 62 84 - -
Viun8g02206 385 FunFam E3 ubiquitin-protein ligase RING1-like 147 233 - -
Viun8g02206 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Viun8g02206 385 Pfam Ring finger domain 185 227 IPR001841 -
Viun8g02206 385 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Viun8g02206 385 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Viun8g02206 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 73 231 - -
Viun8g02206 385 MobiDBLite consensus disorder prediction 61 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02206 Viun-Chr8 32269394 32271049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02206 122 234 C3H Transcription Factor Family AT5G01980 38.938 5.59e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02206 K11982 - gmx:100789228 551.977