Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02183 ATGGGGTGCTGCTTCAGTGCCCAGATCAAAGCTGAGAGCCCTCCACGAAACGGTTTGAGCTCAAAGGATGGTAACAAAGAAGAGGATGGCTTAAGCAGCAAAATCTCCACTCCCTCCTTGCCTCCAACACCAAGGACAGAGGGTGAGATCTTGAAGTCCTCAAATATGAAAAGCTTCACCTTTGGTGAGCTAAAAACTGCTACAAGGAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGAGGGTTTGGCTGTGTTTTTAAGGGGTGGATTGATGAGCAATCACTTGCTCCAGTTAGACCAGGAACTGGATTGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTCATTGGTTACTGCTTAGAGGATGACCATAGGCTTCTGGTGTATGAGTTTCTGACAAAGGGAAGTTTGGATAATCATTTATTTAGAAGAGCTTCTTACTTTCAACCACTTTCTTGGAACATCCGAATGAAGGTTGCTCTCGATGCTGCTAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATACCGAGACTTCAAAGCTTCAAATATCTTACTTGATTCGAATTACAACGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATAAAAGCCATGTCTCTACAAGGGTAATGGGCACTTATGGCTATGCTGCTCCTGAATATATTGCCACAGGTCACTTGACAAAGAAGAGTGATGTATACAGTTTTGGGGTTGTTCTGCTTGAAATCATGTCTGGCAAACGTGCTCTTGACAGCAACAGGCCAAGTGGGGAGCACAATTTAATCGAATGGGCGAAACCATACCTCAGCAACAAACGCAGGATCTTCCAAGTCATGGATGCTCGCATTGAAGGCCAATACTCGATGCGCGAAGCCATGAAAGTAGCGAACCTTGCCATTCAATGCCTCTCTGTGGAGCCAAGATTTCGACCAAAAATGGATGAAGTGGTGAGAGTATTGGAGGAGCTTCAGGATTCTGGTGAGAAAGGTGTTGCAGGGGTGGCAAGCCATCATCATCATCATCATCATCAAACTGGGAGAAGGAGTGACCATAGCTCAAGCAGCAGTGGCAACAGACAACATAGAGGTAGACAACATGAAACAACAATGAAGTGA 1215 0.4535 MGCCFSAQIKAESPPRNGLSSKDGNKEEDGLSSKISTPSLPPTPRTEGEILKSSNMKSFTFGELKTATRNFRPDSVVGEGGFGCVFKGWIDEQSLAPVRPGTGLVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDHRLLVYEFLTKGSLDNHLFRRASYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYIATGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYSMREAMKVANLAIQCLSVEPRFRPKMDEVVRVLEELQDSGEKGVAGVASHHHHHHHQTGRRSDHSSSSSGNRQHRGRQHETTMK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02183 404 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02183 404 MobiDBLite consensus disorder prediction 360 404 - -
Viun8g02183 404 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Viun8g02183 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Viun8g02183 404 FunFam Probable serine/threonine-protein kinase PBL8 157 373 - -
Viun8g02183 404 Gene3D Transferase(Phosphotransferase) domain 1 157 377 - -
Viun8g02183 404 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Viun8g02183 404 MobiDBLite consensus disorder prediction 1 49 - -
Viun8g02183 404 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Viun8g02183 404 CDD STKc_IRAK 77 356 - -
Viun8g02183 404 PANTHER OS01G0588500 PROTEIN-RELATED 37 357 - -
Viun8g02183 404 FunFam Serine/threonine-protein kinase BIK1 39 156 - -
Viun8g02183 404 SUPERFAMILY Protein kinase-like (PK-like) 55 360 IPR011009 -
Viun8g02183 404 MobiDBLite consensus disorder prediction 31 49 - -
Viun8g02183 404 MobiDBLite consensus disorder prediction 387 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02183 Viun-Chr8 32072042 32075440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02183 1 386 Glycoside Hydrolase AT3G07070 44.584 8.06e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun8g02183 PK_Tyr_Ser-Thr 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02183 - - gmx:100775335 731.095