Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02180 ATGCGAAAACCTTGTTGTGACAAAGAAAACATCAATAAAGGAGCATGGTCTAAGCAAGAAGATCAAAAGCTCATTGACTACATCAGAGTTCATGGTGAAGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGGGTTGCATCGTTGTGGCAAAAGCTGCAGACTGAGATGGTTAAACTACTTACGACCAGACATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGATCTTATCATCAAACTCCATGCCCTCCTTGGTAACAGGTGGTCACTCATTGCTGGAAGATTGCCAGGAAGAACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGCAGAAAACTGATAAAGATGGGGATTGATCCAAACAACCATAAGCCACACCAAAGCTTTTCTCGTCCTCATGCTTCTTCTGCTGAGGGGGCATCAACATCCGAATCCATGAACAAAGGCCACAATAAAGTTCCCATCTTTAAATCCCCACTTGCTGCCACTCATCACAGGATTTCCTTCACAGAACAAGAATCAGCAATTATTTCGTCACCCTCTTTGAATCTTGACCTAACAATTGCTTTACCTTCTTCCCTGATTGGTGCTTTGGAAGAAGACACGCCAGTACAAAATTCCGAGTCCACCAACACACAAATAGATCTCAACTGTTAG 663 0.4314 MRKPCCDKENINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFSRPHASSAEGASTSESMNKGHNKVPIFKSPLAATHHRISFTEQESAIISSPSLNLDLTIALPSSLIGALEEDTPVQNSESTNTQIDLNC 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02180 220 Gene3D - 68 141 - -
Viun8g02180 220 Gene3D - 13 65 - -
Viun8g02180 220 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Viun8g02180 220 CDD SANT 71 111 IPR001005 -
Viun8g02180 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Viun8g02180 220 MobiDBLite consensus disorder prediction 125 151 - -
Viun8g02180 220 CDD SANT 15 60 IPR001005 -
Viun8g02180 220 SMART sant 65 113 IPR001005 -
Viun8g02180 220 SMART sant 12 62 IPR001005 -
Viun8g02180 220 FunFam Transcription repressor MYB4 68 134 - -
Viun8g02180 220 MobiDBLite consensus disorder prediction 122 154 - -
Viun8g02180 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Viun8g02180 220 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 164 - -
Viun8g02180 220 FunFam MYB-related transcription factor 12 65 - -
Viun8g02180 220 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Viun8g02180 220 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Viun8g02180 220 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Viun8g02180 220 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02180 Viun-Chr8 32041123 32042703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02180 2 196 MYB Transcription Factor Family AT4G38620 54.502 1.83e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g02180 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02180 K09422 - gmx:100306391 352.058