Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02175 ATGGAGGAGGCTCCTCCGGCGGAGGCGGTGGCCGTACGGCGAGCGTTGGAGCTGCTGCAGCTAAACGACCCCGTTTTGAGGGTCCAAGCGGCCAAGGACATCCGCCGCCTCACCAAAACCTCCCACCGCTGCCGCCGCCAGCTCCGCCAGGCCGTCTCGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCATGAACCCGCCCTTCTCGCTCTCCTCAACCTCGCCGTACAAGACGAAAAGAACAAAATTAGCATTGTGGAAGCTGGTGCATTAGAGCCAATAACAAGTTTCCTCGAGTCAGAAAATCCAAATCTTCGGGAGTATGCAACTGCATCTTTGCTCACTCTATCCGTTTCTCCGACCAACAAACCAATCATTGGTGCTAGTGGCGCAATTCCTCTCCTTGTAAATACTCTCAAAGATGGAAGCCCACAAGCTAAAGTTGATGCTGTGACGGCTCTGTCAAATTTATCAACACACCCAGAAAACCTCAGCATCATTCTCGAAACAAATGCAACGCCTTTTATAGTTAGTCTTCTGAAAACCTGTAGAAAATCCTCAAAACTAGCTGAGAAATGTTGTGCTCTGATAGAATCCTTGGTGGGTTATGAGGAGGGTAGAATTTCCTTAACATCTGAAGAAGGTGGGGTTCTTGCGGTTGTGGAAGTTCTTGAAAATGGGACCCCCCAGAGTAGAGAACATGCTGTTGGAGCACTGCTGAGAATGTGTGAAAGTGATAGATGTAAATACAGGGAACCGATTCTGAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTTACGGTTCAAGGAACCTCTAAATCACAGCCAAAAGCACGTACCCTTTTGCAGCTACTGAGAGAGTCTCCATATTCAAGAGCTGAAGCTGAACCAGACACTCTTCAGAACATAGTCTGTGACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAAGCGAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTGTGTACCCCTTCTGATATGCCTATCACAACTTGTGCTTCTGAAGTTTCTTCAAAATAG 1101 0.4859 MEEAPPAEAVAVRRALELLQLNDPVLRVQAAKDIRRLTKTSHRCRRQLRQAVSPLVSMLRVDSPEFHEPALLALLNLAVQDEKNKISIVEAGALEPITSFLESENPNLREYATASLLTLSVSPTNKPIIGASGAIPLLVNTLKDGSPQAKVDAVTALSNLSTHPENLSIILETNATPFIVSLLKTCRKSSKLAEKCCALIESLVGYEEGRISLTSEEGGVLAVVEVLENGTPQSREHAVGALLRMCESDRCKYREPILREGVIPGLLELTVQGTSKSQPKARTLLQLLRESPYSRAEAEPDTLQNIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMPITTCASEVSSK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02175 366 Gene3D - 2 352 IPR011989 -
Viun8g02175 366 PANTHER U BOX DOMAIN-CONTAINING 11 292 - -
Viun8g02175 366 FunFam U-box domain-containing protein 4 1 348 - -
Viun8g02175 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Viun8g02175 366 SMART arm_5 40 79 IPR000225 GO:0005515
Viun8g02175 366 SMART arm_5 163 205 IPR000225 GO:0005515
Viun8g02175 366 SMART arm_5 122 162 IPR000225 GO:0005515
Viun8g02175 366 SMART arm_5 81 121 IPR000225 GO:0005515
Viun8g02175 366 SMART arm_5 206 247 IPR000225 GO:0005515
Viun8g02175 366 SUPERFAMILY ARM repeat 15 299 IPR016024 -
Viun8g02175 366 Pfam Armadillo/beta-catenin-like repeat 125 161 IPR000225 GO:0005515
Viun8g02175 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 50 92 IPR000225 GO:0005515
Viun8g02175 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02175 Viun-Chr8 31992197 31995685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02175 12 296 U-box Gene Family AT2G23140 34.146 1.13e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02175 - - gmx:100793971 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02175 8 31992197 31995685 Viun8g02175 8 31992197 31995685 ECH
Viun1g03070 1 39047857 39051820 Viun8g02175 8 31992197 31995685 PCT