Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02174 ATGCCACTCTCTTTGACATCTCATGGGGTCAATGAGTACCAAAAATGTGGGGTTCAAGAGGAAGATAACTCACAAACTACTACTAATGGATTCAGCAATGATTCAGCTTCAGCTTCAGCCGTAACTCAATCTCTGATTAACTTCAAAGCCAACGACTTCAGCAACCTCATGAAAGGTAGTGATTCTTTTCTCAGCTTTCAGCAGAGCTGGTTGTTTTCCAAATTGCATGAAGGTTGTGACCAATGGAACCATGTCAGTCCCAAAAACACCACAGACATGCGCCTGGTTCAAAATTTCAGCTGCTCTGAAACTGCTACTTGCTATAGCTCCATATTCAGTGGTGCAAAAGAGAAGAAACATGGTGAAAGTTCATCTTCTGGGTGGCTATATTCAGAACCAAATGTCCATAGTTCTAGCCTGAATGAGTCAGCAGCAGAAGAATTGGTCTTGAGAAAGCGATCTTTTATGGGAGAGAGCATGCAAGCTGCCAATGCCAAGAAGCCATGCACAATTGCAAGTAAAGCAACAAAACCAAAGTCAAGCCCTTCTAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAACGGCTTAAGATACTCCAAGAACTGGTCCCCAACGGCTCCAAGGTTGATTTGGTGACCATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCAGATGAATTTTGGCCTGTACAAGGTGGAAAAGCCCCTGACATTTCTCAAGTAAGACAAGCCATTGATGCCATTCTTTCATCTCAAAGATGA 810 0.4284 MPLSLTSHGVNEYQKCGVQEEDNSQTTTNGFSNDSASASAVTQSLINFKANDFSNLMKGSDSFLSFQQSWLFSKLHEGCDQWNHVSPKNTTDMRLVQNFSCSETATCYSSIFSGAKEKKHGESSSSGWLYSEPNVHSSSLNESAAEELVLRKRSFMGESMQAANAKKPCTIASKATKPKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02174 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Viun8g02174 269 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 239 IPR045843 GO:0003700|GO:0006355
Viun8g02174 269 MobiDBLite consensus disorder prediction 174 188 - -
Viun8g02174 269 SMART finulus 188 237 IPR011598 GO:0046983
Viun8g02174 269 CDD bHLH_AtIND_like 183 245 - -
Viun8g02174 269 MobiDBLite consensus disorder prediction 166 194 - -
Viun8g02174 269 Gene3D - 177 239 IPR036638 GO:0046983
Viun8g02174 269 FunFam Transcription factor bHLH83 180 239 - -
Viun8g02174 269 Pfam Helix-loop-helix DNA-binding domain 192 232 IPR011598 GO:0046983
Viun8g02174 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 241 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02174 Viun-Chr8 31982133 31983705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02174 80 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 55.385 3.12e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g02174 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02174 - - vra:106764568 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02174 8 31982133 31983705 Viun8g02174 8 31982133 31983705 ECH
Viun1g03069 1 39031907 39033874 Viun8g02174 8 31982133 31983705 PCT