Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02172 ATGATGAGTTTCTGTTCTGATCACACCAAGGGTGTTGTTTCCAATGCACATGTTTCCTCTGCAGCTGGAAATGACTCTTCTGAGAACAAAAGCCTCAAACTCGTATCCTTTTTGAGAAAAACCATGTGGAACTTTGCCTTGGCATGTGTTGGTGTTGGTCCTTGTGGTGGCAACAACGACAATAACAGTCAAAGGAAGACAACATCGGAGCATAACAAGGCGTGGTTGCTGGCGGAGTCTGGAGCAGAATTGACTAGTGCTGACCCTCAATCGCATCATTCCTCTTTCAGGTTCAGCTTCTGCTCTCAGGTTGAGGTTGAGTCCTTCAACATGAGCTCTTCTGCTTCTGCTGCTGCCGCTGCAACCTTTTTGATGGTAAATTTGGAATGTGAATCTCAAGTTAAGGAGATGAAATGGAGAATACATTCACTGGAGAAAAGCATGTCTCCAGTCTTCAACCCTCTGATCAGGTTCAGCTATGATGAAATTCTCTCAGCTACTCACAATTTCTCCAAAGGGAGAGTGTTGGGGAGAGGTGCCTTGAGCTGTGTTTATAGAGGAAGAGTTGGGTTTTGGAGAACTGCTGTTGCTATTAAAAGGTTGGACAAGGAAGACCAAGAGTGTGCCAAGGCGTTTTGCAGAGAATTGATGATTGCTAGTTCTCTTCATAACACAAATGTTGTTCCTCTTGTGGGGTTTTGTATTGACTCAGAAGAGGGTTTGTTTTTGGTATACAAGTATGTGTCTGGGGGCAGCTTAGAGCATCACTTGCATGGGAGGAAGAAAAGTGTGAAGGGTAGTTCACCACTTCCATGGTCTGTGAGATACCAAGTTGCAATTGGGATTGCAGAAGCTGTGGCTTATCTGCATAATGGAACAGAAAGATGTGTTGTTCATAGAGACATTAAGCCTTCAAACATTCTGCTCTCCTCTAAGAAGATTCCCAAGTTATGTGACTTTGGATTAGCTACATGGACTTCTGCCCCATCAGTTCCTTTTCTTTGCAAAACAGTGAAAGGAACATTTGGTTATTTGGCTCCTGAGTATTTCCAACATGGGAAAGTGTCAGACAAGACTGATGTTTATGCTTTGGGAGTTGTTTTATTGGAACTCTTAACTGGCCGCAAGCCAATTGAAGCAAAAAGACCCCCTGGAGAGGAAAACTTGGTAGTATGGGCTAAACCTTTGCTCAGGAAAGGGAAAGGAGCGATTGAAGAATTGCTTGATCCTCAAGTCAAGAACAATACAAGTTACACAGATCAAATGGGTCGGATGGTTGATGCAGCAGCTGCTTGTGTTACAAATGAAGAATCTAGGAGGCCAAGCATAGGTGAAATTGTTGCAATACTGAAAGGTGAAGTTGAACCTGTGCTGTCTAGAAGAAGGAAATCTGGTTATCTTGGTAATGGGTTTGTGATTGATTATTACCCTCAGTTACATCAAACAAACAATGAGATGAAAAGTCACTTGGCCTTGGCAATGCTAGGAGTTCCAGAGTGTGAGGATGATGATTTTCTCTACGGTCGTTGA 1530 0.432 MMSFCSDHTKGVVSNAHVSSAAGNDSSENKSLKLVSFLRKTMWNFALACVGVGPCGGNNDNNSQRKTTSEHNKAWLLAESGAELTSADPQSHHSSFRFSFCSQVEVESFNMSSSASAAAAATFLMVNLECESQVKEMKWRIHSLEKSMSPVFNPLIRFSYDEILSATHNFSKGRVLGRGALSCVYRGRVGFWRTAVAIKRLDKEDQECAKAFCRELMIASSLHNTNVVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHGRKKSVKGSSPLPWSVRYQVAIGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKIPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYALGVVLLELLTGRKPIEAKRPPGEENLVVWAKPLLRKGKGAIEELLDPQVKNNTSYTDQMGRMVDAAAACVTNEESRRPSIGEIVAILKGEVEPVLSRRRKSGYLGNGFVIDYYPQLHQTNNEMKSHLALAMLGVPECEDDDFLYGR 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02172 509 ProSiteProfiles Protein kinase domain profile. 170 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02172 509 FunFam Putative receptor-like serine/threonine-protein kinase 248 465 - -
Viun8g02172 509 SMART serkin_6 170 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02172 509 FunFam probable serine/threonine-protein kinase PBL7 132 247 - -
Viun8g02172 509 Pfam Protein kinase domain 171 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02172 509 PANTHER OS01G0750732 PROTEIN 47 455 - -
Viun8g02172 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Viun8g02172 509 SUPERFAMILY Protein kinase-like (PK-like) 149 451 IPR011009 -
Viun8g02172 509 Gene3D Transferase(Phosphotransferase) domain 1 248 461 - -
Viun8g02172 509 Gene3D Phosphorylase Kinase; domain 1 155 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02172 Viun-Chr8 31955341 31957938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02172 158 453 Trihelix Transcription Factor Family AT1G70460 41.946 4.46e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun8g02172 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02172 - - gmx:100802176 867.455