Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02168 ATGAACACTATTATCCGCCGCCGCCTAAGGCTAAGTCCAAAACTTCTTCTTTATTCTTTCCCCAAATCCTCTTTCTTCTTCTTCTCAACGACCACTTCTGATTCTGTCTCCTTCACCATATCCTACCTCACCAACACCTGCGGCTTCACACGAGAGGCTGCACTGAAACTATCCAAACGACTTCGTTTCAACACGGCCCAAAAACCCGATTCCGTCATCTCCTTCTTCCAAACCCACGGTTTCTCCGCCGCCCAGATCCACCGCATCCTCAGCCTATCCCCCGAACTCATGGTATGCAACCCCACCCGAAGGCTTCTCCCCAAATTCCACTTCTTGGCCTCCAAAGGCTTTTCTGCATCCGACGTCGTTTCCATTGTCGCTAAGAACCCCCGTTTCCTCTGTCAGAGCCTCGAAAACCGCATCTTCCCCACCTTCCAACTCATCCGAAGGTTCTTCCCCTCCGACCTCAGAGCCCTCGCTGTTTACATCGCCTGTCCCTCTGTCATCGGACACTGTCGCGTGGCATCAAACGTTGAAAGGTTGCTCGACGCCGGAGTCTCGCACGCCGGCATTCGGCACTTGCTCTCCTCTCGGCCTCTGGTTCTGTGCTTCAACCTGAGAACCCCCTTGGAGGAAGTGAAACTGTTGGGGTTTGACCCTTTGAAGGTGACCTTCGCTGTGGCCCTTGTGGCCAAAAGGACTGTTTCCAAACCCCTTTGGGATGCTAAAGTCGCCGTCTTGAAGAAGTGGGGTTGGTCTAAGGATGAGGTTTTGGTTGCGTTTAGGAAACAACCTACGATGATGCTCTGTTCCTTGGAGAAACTTGATGCAGTGGCGGGGCTTTGGGCGGGTCGGCTTGGATGGGATCGTTCTGCGCTTATTGCGTACCCCTCGTTGTTTTTGTACAGTTTGGAGAAAAGACTTGTTCCGAGGGCTTTGGTGTTGCAGCATCTTCTCTCCAGAGGATTGGTGAAGAAGGATGCTAACTTCGTCACACCGTTTTGTAGGTCTGATGAGGGTTTTCTGGAAAAGTACGTGACATCTTTCGAGGAGGAAACACCCAGGTTACTAGAGCTATATCAGAAGGGACAGGGAGCATGCTAG 1104 0.5199 MNTIIRRRLRLSPKLLLYSFPKSSFFFFSTTTSDSVSFTISYLTNTCGFTREAALKLSKRLRFNTAQKPDSVISFFQTHGFSAAQIHRILSLSPELMVCNPTRRLLPKFHFLASKGFSASDVVSIVAKNPRFLCQSLENRIFPTFQLIRRFFPSDLRALAVYIACPSVIGHCRVASNVERLLDAGVSHAGIRHLLSSRPLVLCFNLRTPLEEVKLLGFDPLKVTFAVALVAKRTVSKPLWDAKVAVLKKWGWSKDEVLVAFRKQPTMMLCSLEKLDAVAGLWAGRLGWDRSALIAYPSLFLYSLEKRLVPRALVLQHLLSRGLVKKDANFVTPFCRSDEGFLEKYVTSFEEETPRLLELYQKGQGAC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02168 367 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Viun8g02168 367 SMART mt_12 123 153 IPR003690 GO:0003690|GO:0006355
Viun8g02168 367 SMART mt_12 290 324 IPR003690 GO:0003690|GO:0006355
Viun8g02168 367 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Viun8g02168 367 SMART mt_12 192 219 IPR003690 GO:0003690|GO:0006355
Viun8g02168 367 PANTHER CGI-12 PROTEIN-RELATED 35 348 IPR003690 GO:0003690|GO:0006355
Viun8g02168 367 FunFam Mitochondrial transcription termination factor-like 137 353 - -
Viun8g02168 367 Pfam mTERF 242 326 IPR003690 GO:0003690|GO:0006355
Viun8g02168 367 Pfam mTERF 73 274 IPR003690 GO:0003690|GO:0006355
Viun8g02168 367 Gene3D Transcription termination factor 3, mitochondrial 164 354 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02168 Viun-Chr8 31933134 31935685 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun8g02168 mTERF 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02168 K15032 - var:108336607 322.783