Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02142 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTCATCACCTTCATCCTCACCAATGGCCAATATTGCTGGAGAGCTGTCCCTAAACTTGCAGGACTATTGAGGTGTGGGAAGAGTTGCAGACTGAGGTGGACGAATTACCTTAGACCAGACTTAAAGAGAGGCCTTCTTTCAGAATACGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTCGGCAATAGATGGTCCAAGATTGCTTCTCATCTTCCTGGAAGAACTGATAACGAGATAAAAAACCATTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTATCACACACAAACCACTCCCTAATGCAACTCAACAAACCCAAAATCAACCCCAACAGGAACAACAACAACAGCTACACAAACCCCCAGAAGAAGAGCAAAATTACCAACAACCTCTGCAAGTTGACTTTGACACCAAGGTTGACCCTAACAAGGAGCCAGAGATTTCAGTGGAATCATCAAACATCAGTGAAGCCAAAGAGGAAGAGCAAATCACAGCAACACCCCAATTTGAGACAATGGAGCTTAGTCAGCTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATTGAACCTAATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCATCCACCTCTACATCTTCTTCAAATTCAACCAACATCCTTGAAGACCTGCAGCTACCTGATTTTGAATGGTCCTGTGATTACAGTGATAGTAGTCTTATTATTAACAATAACAACCATGAAGACAAGAACAACAACAATAACACTGTGACTTTGTGGGATGATGATGACTTTATTAGCAAACTTAATTGGCTGATCAATGAAGACGATGATTGTGATGGAAACCAAGTGTTTGATGGTCCTCTCACTCAATTCTCAAGAACTGTCACGGATTCAGAATCTTGGGCATTTGGCTTGTTTTGA 1002 0.4182 MGRQPCCDKVGLKKGPWTAEEDKKLITFILTNGQYCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLPNATQQTQNQPQQEQQQQLHKPPEEEQNYQQPLQVDFDTKVDPNKEPEISVESSNISEAKEEEQITATPQFETMELSQLMNGFCTDEVPIIEPNEILMPCAPSSSSTSTSSSNSTNILEDLQLPDFEWSCDYSDSSLIINNNNHEDKNNNNNTVTLWDDDDFISKLNWLINEDDDCDGNQVFDGPLTQFSRTVTDSESWAFGLF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02142 333 SMART sant 66 114 IPR001005 -
Viun8g02142 333 SMART sant 13 63 IPR001005 -
Viun8g02142 333 FunFam MYB-related transcription factor 70 130 - -
Viun8g02142 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun8g02142 333 CDD SANT 16 61 IPR001005 -
Viun8g02142 333 MobiDBLite consensus disorder prediction 128 166 - -
Viun8g02142 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun8g02142 333 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Viun8g02142 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun8g02142 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun8g02142 333 PANTHER F14D16.11-RELATED 1 290 - -
Viun8g02142 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun8g02142 333 FunFam MYB transcription factor 11 67 - -
Viun8g02142 333 CDD SANT 74 112 IPR001005 -
Viun8g02142 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun8g02142 333 MobiDBLite consensus disorder prediction 122 192 - -
Viun8g02142 333 Gene3D - 70 157 - -
Viun8g02142 333 Gene3D - 11 67 - -
Viun8g02142 333 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02142 Viun-Chr8 31726775 31729224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02142 1 333 MYB Transcription Factor Family AT5G16600 47.945 1.29e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g02142 Myb_DNA-binding 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02142 K09422 - gmx:100800494 487.263