Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02130 ATGAAGTCTGCGCAGGTCAAAGAAGCGATTCTCTTTACTCTCCTAACGTGCGTCTTCGCCATTGCAGATTCGGATCTAGCTTCGGACAGAGCGGGGCTAGTGTCACTCCGAAGCGCGTTGGGGGGACGCACGCTGCTATGGAACACCACCCAAACAAACCCTTGCAGGTGGACCGGCGTCACCTGCACTAACGATAGAGTAACCATGCTCCGCCTCCCAGCGATGGGTCTCTCCGGTTCGCTCCCCTCCGGTTTGGGAAACCTCACCGAACTGCAGACGCTCTCCCTCCGGTTTAACGCTCTAACCGGACCAATCCCCGCGGATTTCGTCAACCTCAAAGCGCTGCGGAACCTCTATCTCCAGGGAAACTTCTTCTCCGGCGAACTTCCCGATGCGGTGTTCGCGTTGCAGAACCTCGTGAGGTTGAATTTAGGTAACAACAATTTCAGCGGCGAAATTTCGCCCAAGTTCAATGGTCTCACTCGTTTGTCCACTCTCTATCTCGAACGCAACAATTTCACTGGTTCAATCCCTGACCTTAGTGTTCCGCCTCTGGATCAGTTCAATGTCTCGTATAATTCCCTTACCGGTCCCATTCCGAACCGGTTTTCGAGTCGGGACCAAACCGCTTTTCTCGGTAACTCACTCTGCGGGAAGCCCCTGCAAAGTTGCCCCGGAAGCGAGGAGGGAAAGAGTAAATTATCCGGTGGTGCCATTGCGGGTATTGTGATAGGTTCCGTGGTTGGTTTGCTGTTGATTCTGCTGCTTTTGTTCTTTTTGTGTAGAAAAAGGAGTGGGAAAAACGATGAAAGTGTGTCAACAGGGAAGCGTGATGTGGAAGGTGAAGTGTCTCGTGAAAAGAGTGTGGAGAGTGGGAATTCAGGTTCGGCGGTGGCAGGTTCGGTGGAGAAAAGCGAGGTTCAAAGCAGTGGTGGTGGAGATAAGAGTTTGGTGTTTTTTGGGAATGTGAATAGAGTGTTTAGTTTGGATGAGTTGTTGAGGGCTTCTGCGGAAGTGTTGGGGAAAGGAACGTTTGGAACGACCTACAAGGCGACGTTGGAAATGGGGGTGAGTGTGGCGGTGAAGAGGTTGAAGGATGTCACAGCCGCAGAGAGGGAATTCAGGGAGAAGATTGAGCAAGTGGGGAAGATGGTTCATCACAACTTGGTCCCACTAAGGGGTTATTACTTTAGCAGGGATGAGAAGCTTGTTGTCTATGATTACATGCCCATGGGAAGCTTATCTGCACTATTGCATGCAAACGGTGGAGTGGGGAGGACTCCACTGAATTGGGAAACAAGGTCTAGCATTGCTCTTGGTGCTGCTCGTGGGATTGCACACATTCATTCTCATGGTCCAACATCCTCTCATGGGAACATCAAGGCATCGAATATTCTTCTGACGAAATCTTTTGAAGCTCGTGTCTCTGATTTTGGGCTTGCTTACCTTGCTCTTCCAACCTCAACGCCAAACCGTGTTTCTGGTTACAGAGCACCAGAGATCACTGATGCGCGCAAAGTATCCCAAAAAGCTGATGTGTATAGCTTCGGCATCATGCTTCTGGAGCTGCTTACAGGGAAGGCTCCGGCTCATTCTTCACTGAATGACGAAGGGGTGGACCTCCCAAGATGGGTTCAATCTGTGGTTGAAGGTGAGTGGAACACTGATGTGTTTGACATGGAGCTTCTGCGGTACCAGAGTGTTGAGGACGAAATGGTGAAGCTCTTGCAGCTTGCCCTTGAATGCACTGCACAATATCCTGATAAGAGACCTTCAATGGACGTGGTGGCAACCAAGATTGAAGAAATTTGCCATTCTAGTTTAGAGAAAGAGGAAGGGAAGAATCATGATTTTAAAGATCCTGATCATGGATTTTCGCAACAGTACTACTCTGTTGACTCGGGTGTGTCACAAGCTTGA 1920 0.499 MKSAQVKEAILFTLLTCVFAIADSDLASDRAGLVSLRSALGGRTLLWNTTQTNPCRWTGVTCTNDRVTMLRLPAMGLSGSLPSGLGNLTELQTLSLRFNALTGPIPADFVNLKALRNLYLQGNFFSGELPDAVFALQNLVRLNLGNNNFSGEISPKFNGLTRLSTLYLERNNFTGSIPDLSVPPLDQFNVSYNSLTGPIPNRFSSRDQTAFLGNSLCGKPLQSCPGSEEGKSKLSGGAIAGIVIGSVVGLLLILLLLFFLCRKRSGKNDESVSTGKRDVEGEVSREKSVESGNSGSAVAGSVEKSEVQSSGGGDKSLVFFGNVNRVFSLDELLRASAEVLGKGTFGTTYKATLEMGVSVAVKRLKDVTAAEREFREKIEQVGKMVHHNLVPLRGYYFSRDEKLVVYDYMPMGSLSALLHANGGVGRTPLNWETRSSIALGAARGIAHIHSHGPTSSHGNIKASNILLTKSFEARVSDFGLAYLALPTSTPNRVSGYRAPEITDARKVSQKADVYSFGIMLLELLTGKAPAHSSLNDEGVDLPRWVQSVVEGEWNTDVFDMELLRYQSVEDEMVKLLQLALECTAQYPDKRPSMDVVATKIEEICHSSLEKEEGKNHDFKDPDHGFSQQYYSVDSGVSQA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02130 639 MobiDBLite consensus disorder prediction 267 311 - -
Viun8g02130 639 CDD STKc_IRAK 340 603 - -
Viun8g02130 639 FunFam Probable inactive receptor kinase At1g48480 409 611 - -
Viun8g02130 639 Gene3D Ribonuclease Inhibitor 32 136 IPR032675 -
Viun8g02130 639 MobiDBLite consensus disorder prediction 267 287 - -
Viun8g02130 639 FunFam pollen receptor-like kinase 1 303 408 - -
Viun8g02130 639 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Viun8g02130 639 Pfam Protein kinase domain 337 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02130 639 FunFam Probable inactive receptor kinase RLK902 26 181 - -
Viun8g02130 639 PANTHER OS05G0588300 PROTEIN 11 607 - -
Viun8g02130 639 MobiDBLite consensus disorder prediction 609 623 - -
Viun8g02130 639 Gene3D Ribonuclease Inhibitor 137 224 IPR032675 -
Viun8g02130 639 Gene3D Phosphorylase Kinase; domain 1 302 408 - -
Viun8g02130 639 MobiDBLite consensus disorder prediction 288 311 - -
Viun8g02130 639 MobiDBLite consensus disorder prediction 609 639 - -
Viun8g02130 639 Gene3D Transferase(Phosphotransferase) domain 1 409 625 - -
Viun8g02130 639 SUPERFAMILY L domain-like 46 206 - -
Viun8g02130 639 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Viun8g02130 639 SUPERFAMILY Protein kinase-like (PK-like) 338 597 IPR011009 -
Viun8g02130 639 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02130 Viun-Chr8 31639306 31642455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02130 25 603 Receptor kinase-like Gene Family AT1G48480 57.492 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun8g02130 Pkinase 5.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02130 - - gmx:100801103 1015.37