Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02109 ATGTCTTTCACTCTCATCGAAGCCTGCAAGAAGCGAAAACGGTGGCCAAAATTTTTCAGGTTTCACTCCTTCGGTGACCCTGGTATTCCAATTGTACCTTTGGGTACTTTCCGCGATAATGTTCGGGTTTTCCTTCAAGAAGCTGGAGAACCTGAAGATTATAGTGTCTCCGGGAACCCCCTATGGTGTACCCTTCTCATCCATGATAAGTCCAACGTAATGGCTCCTCTTTACACCGTCGAAGAGCACGTCTACCACTCTTCGCACCCCTTCTGTGATCACTGCCGCTGCGTAGGTTGGAGTGGCCATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCGATGGACAGTGGGTGGCATAAGCCCTTAGATGAAGATTCTATAGATAATCAGAGGCATCTGTTGCATGGGGTGATTCATTGCAATGGATATGGCCATTTGCTCTCTGTAAATGGCATTGAAGGAGGCTCCAAGGTTCTTAGTGGCAGAGAGATTATGGATCTATGGGATAGGGTATGCACCAACCTCCGAGTAAGGAAAGTTGCAGTTGAAGATGTTTCGTGTAAGAGGTCTATGGACCTTCGCTTACTTCATGGAGTCGCCTATGGACACTCCTGGTTTGGCAGATGGGGTTATAGATTTTGCCGTGGAAGCTTTGGAGTGACAGAACCAAACTACAACGAAGCAATGACAACGCTGGGCTCCTTGGAGCTAGACATGATTGCAAAAGATTTGAGTAAGACAAAGTACAACAAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAGACTCACATTATCTCACTCAGGGATCTCCTAAGGTTTATGCTTACTGTAAAGTCTTCCCGTTCTCCAGCGCCTAAGATAACAGTCTCCTATTCTGCCGCCGCTGATTCTACCTGTTCAGCATTAATGTCAAGAAATTCAACCAAACACACTCTTCCAACCAGATCAAATTCCATGAAGGAGAAATCTGTTAGGTATAAGAAGTTCAGCAATGCAGTGACTAACATGGATAGTAGGTGGCCGACAAGGAGGCTAGAGTTTGCAGCTCAAGTGATTGTGGACGCACTGAAAGAAAACAAGGCTGTTAAACCAGGCACAGGTGGGATGGCAAGGCAAGATGTGAGAGATGCAGCTAGGCTTCACATTGGTGACACAGGTTTACTTGATTATGTACTTAAATCACTGAACAATGTCATTGTTGGAAACTACGTTGTTCGTCGCATGGTGAATCCATCAACTAGAATTCTAGAGTACACTATTCACGATCTTGGCAAGGGGTACAAAGCCCCTGAACTGGAGACTGAGGGAATGGCTTATGTAGATCAACAAGTAGTAGAGTCATCTTGGGTGCCCGGTAACGATGTTTACTGCGATGTACTGTTTTTGTACAAGAATGTGCTATTGGGCTACCCTGATTCAGAAGTAGTGGACTTGGCCATTCAGACAATTCTAGACAGCAGATACTTTGTAAAGGAGTGGGGAGAGAGGGATGAAATAGAGGAGCAGTCATTGACATTCATTTGCCGGCTGCAACCAAATTTTGTGGACAAAAAGTATGAGTTGAAAGGTCTACCATGTGGTGAGGTTGTGGTGGTTCCGCTGCATGCAACGGTTGGAGACTTGAAGAGGGCTTCTGAGGCTGCTCTGAGGGACACTTACTGCATTGCAGAAAGGCTTATAGTGACAGACATTAAACAGCTTATGGGAGTGAGTGATGAGGAAGTGCTGTTTGGACTAATCCAGTCCGGTGTAGAACTTTGTGTGAGGGGAATTGCCATTGATTTGTGCACGAATTTGAAGTATCAGGGTGGATCTGATAACTGGAAGGTGAGATGCGAGTGCGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAAGTGTGGCAGCATACTCGCTGCTGTGGCATTGATGATTCTGAGACAGTGCCACCACTTTTTGTCTGCACTGGTTGCTGTGATTCACTCGTACCCTCCAGGACCGAATCATCCTTTTGTGCAGATTCTCCTGATTCTTTTCTCATTTCAGCAGATCCTTCTCTTCTGCTAGAATATGAGTATGCGTGA 2097 0.453 MSFTLIEACKKRKRWPKFFRFHSFGDPGIPIVPLGTFRDNVRVFLQEAGEPEDYSVSGNPLWCTLLIHDKSNVMAPLYTVEEHVYHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDSGWHKPLDEDSIDNQRHLLHGVIHCNGYGHLLSVNGIEGGSKVLSGREIMDLWDRVCTNLRVRKVAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEPNYNEAMTTLGSLELDMIAKDLSKTKYNKEIKQMIRCYRDMSETHIISLRDLLRFMLTVKSSRSPAPKITVSYSAAADSTCSALMSRNSTKHTLPTRSNSMKEKSVRYKKFSNAVTNMDSRWPTRRLEFAAQVIVDALKENKAVKPGTGGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGKGYKAPELETEGMAYVDQQVVESSWVPGNDVYCDVLFLYKNVLLGYPDSEVVDLAIQTILDSRYFVKEWGERDEIEEQSLTFICRLQPNFVDKKYELKGLPCGEVVVVPLHATVGDLKRASEAALRDTYCIAERLIVTDIKQLMGVSDEEVLFGLIQSGVELCVRGIAIDLCTNLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLVPSRTESSFCADSPDSFLISADPSLLLEYEYA 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02109 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 667 IPR013083 -
Viun8g02109 698 CDD PHD_MMD1_like 618 662 - -
Viun8g02109 698 SUPERFAMILY FYVE/PHD zinc finger 607 668 IPR011011 -
Viun8g02109 698 SMART PHD_3 617 663 IPR001965 -
Viun8g02109 698 ProSitePatterns Zinc finger PHD-type signature. 618 662 IPR019786 -
Viun8g02109 698 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02109 Viun-Chr8 31501646 31504430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02109 10 668 PHD Transcription Factor Family AT5G22260 33.853 1.01e-118 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02109 K26271 - gmx:100797388 1247.65