Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02107 ATGGTGAACAGTACCGCCACCACCACCACCACCACCACCACCTACTTTCCAAATCTTCTACCTTTCTTCATTTTCTTAACCATGATGACCCTTTTCGTGAACTCCCAGGACGATGTTTCAGTAATGCTGGCTCTCAAGAACAGCCTCAACCCGCCGGGGTGGACCGGCCCGGACCCATGCATGTGGGACCACGTCAGGTGCTCTGAGGATAAACGGGTTACCCGGATCCAAATCGGGCGCCTCAATCTCCAGGGCACTCTCCCTGCAACTCTTCAGAACTTGACCCGGTTGGAACAGTTGGAGCTGCAATACAACAACATCTCGGGTCCCATTCCCTCGCTTAACGGCTTGACCAACCTCCGTGTGTTTATTGCCAGCAATAACCGTTTCTCCGCCGTCCCCGCCGACTTCTTCTCCGGCATGTCGCAGCTCCAGGCGGTGGAGATCGACAACAACCCCTTTGAGCCCTGGGAGATCCCTCTGACTCTCCGAAACGCTTCTGAGCTTCAGAACTTCTCTGCCAACTCTGCCAATGTCAGAGGCACTTTGCCGGATTTCTTCAGCTCCGACGTGTTTCCTGGTTTGACCGTTTTGCACCTGGCCATCAATAACCTCGAGGGGTCGTTGCCTTTGAGCTTTTCTGGCTCTCAGATTCAGTCTTTGTGGTTGAATGGGCAGAAGAGCGTTAACAGGCTCGGTGGCAGTGTTGCTGTTTTGCAGAACATGACTTTCTTGACCGAGGTTTGGTTGCATTCCAATGCTTTTACGGGTCCCTTGCCTGATTTGTCCGGGTTGAAGAGTTTGAAGGTTTTGGGTTTGAGGGATAACAGGTTTACTGGTCCTGTTCCGCCTTCGTTGGTGGGTCTCAAGACTCTTGAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGTCCTATGCCGGTGTTTGGCAATGGAGTTGAGGTGGATAACGATAAGGATTCCAACAGTTTTTGTTTGTCAGGACCTGGTGATTGTGATTCCAGGGTGCAGGTTCTTCTTTCTGTTGTTGGCCTTATGGGGTATCCTCAAAGGTTTGCCGAGAGTTGGAAGGGGAATGATCCTTGTGCTGATTGGATTGGGATTTCTTGTGGAGATGCGAATATAACTGTTGTTAATTTTCAGAAGATGCAACTTAGTGGTGAGATATCCCCGGACTTTTCAAAGATTAAATCTTTGCAAAGAATAGTACTTGCGGATAACAATCTCACTGGTTCAATTCCAGTAGAGCTTACTACTTTGCCTCGGCTTAGTCAATTGAATGTTGCGAACAATCAGCTTTATGGGAAGGTGCCGAGTTTTAGGAGTAATGTAGTTGTGAGTACTAATGGTAATGTTGATATAGGGAAGGATAAGAGTAGCCAGTCCCCTCCGGGTTCAGTGTCTCCAACGGCTCCCAATTCAAAGGGAGAAAACGGTGGGGGTTCTGGAAATGGTGGCAAAAAGTCTTCCCATGTGGGAGTGATCGTGTTTTCGGTGATTGGGGCGCTTTTTGTGGTTTCTATGATTGGTTTCCTGGTTTTCTGCCTGTTTAGGATGAAGCAAAAGAAGTTGAGCAGGGTCCAGAGCCCAAATGCTCTAGTTGTTCATCCTAGGCATTCTGGGTCGGATAATGAGAGTGTGAAGATAACAGTTGCAGGTTCAAGTGTCAGTGTTGGTGGTGCTAGTGAAACGCGAACCATACCTGGCAGTGAGACAGGAGATATCCAAATGGTTGAAGCCGGAAACATGGTCATTTCCATACAAGTTCTGAGGAATGTCACGGACAACTTCAGTGAGAAGAACATATTGGGACAAGGAGGTTTTGGAACGGTTTACAGAGGTGAACTCCATGATGGTACAAGAATTGCAGTGAAAAGAATGGAGTGTGGGGCAATAACAGGGAAGGGTGCAGCAGAATTCAAGTCTGAAATTGCTGTTTTGACAAAGGTTCGCCACCGGCATCTTGTGGCTCTTCTAGGTTACTGTTTGGACGGGAATGAGAAGCTGCTTGTGTACGAGTACATGCATCAAGGAACATTGAGTAGGCATCTTTTCAACTGGCCAGAGGAAGGATTGGAACCACTGGAGTGGAATAGAAGATTGACAATTGCCTTAGATGTGGCAAGGGGTGTCGAGTACCTCCATGGCTTGGCCCATCAAAGCTTCATTCACAGGGACTTGAAACCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTTGGTCTTGTGCGTCTTGCTCCGGAAGGAAAAGCATCTATAGAAACAAGAATTGCAGGAACTTTTGGATATTTGGCACCCGAGTATGCAGTGACCGGGCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGGGTAATATTGATGGAGCTGATAACAGGAAGAAAAGCACTTGATGAGACACAACCCGAGGATAGCATGCACCTTGTAACATGGTTCCGCAGAATGTCCATAAACAAGGATTCATTCCGCAAGGCCATTGATTCCACCATCGATCTCAACGAGGAAACTCTGGCCAGTATTCACACCGTAGCAGAGTTAGCTGGCCACTGCTGTGCCAGGGAGCCATATCAAAGGCCTGACATGGGTCATACTGTTAACGTGCTTTCTTCTCTCGTTGAACTATGGAAACCCTCTGATCAGAATTCAGAAGATATATATGGCATTGACCTTGACATGTCCTTGCCACAAGCACTCAAGAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGAGTCCTCTGCTTCATCTTCGCTTCTACCAAGCTTGGATAACACACAGACAAGTATACCTACTCGCCCATATGGATTTGCAGATTCTTTCACATCAGCAGATGGTAGGTGA 2856 0.4758 MVNSTATTTTTTTTYFPNLLPFFIFLTMMTLFVNSQDDVSVMLALKNSLNPPGWTGPDPCMWDHVRCSEDKRVTRIQIGRLNLQGTLPATLQNLTRLEQLELQYNNISGPIPSLNGLTNLRVFIASNNRFSAVPADFFSGMSQLQAVEIDNNPFEPWEIPLTLRNASELQNFSANSANVRGTLPDFFSSDVFPGLTVLHLAINNLEGSLPLSFSGSQIQSLWLNGQKSVNRLGGSVAVLQNMTFLTEVWLHSNAFTGPLPDLSGLKSLKVLGLRDNRFTGPVPPSLVGLKTLEVVNLTNNLFQGPMPVFGNGVEVDNDKDSNSFCLSGPGDCDSRVQVLLSVVGLMGYPQRFAESWKGNDPCADWIGISCGDANITVVNFQKMQLSGEISPDFSKIKSLQRIVLADNNLTGSIPVELTTLPRLSQLNVANNQLYGKVPSFRSNVVVSTNGNVDIGKDKSSQSPPGSVSPTAPNSKGENGGGSGNGGKKSSHVGVIVFSVIGALFVVSMIGFLVFCLFRMKQKKLSRVQSPNALVVHPRHSGSDNESVKITVAGSSVSVGGASETRTIPGSETGDIQMVEAGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYRGELHDGTRIAVKRMECGAITGKGAAEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMHQGTLSRHLFNWPEEGLEPLEWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDETQPEDSMHLVTWFRRMSINKDSFRKAIDSTIDLNEETLASIHTVAELAGHCCAREPYQRPDMGHTVNVLSSLVELWKPSDQNSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSASSSLLPSLDNTQTSIPTRPYGFADSFTSADGR 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02107 951 Pfam Protein kinase domain 598 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02107 951 SUPERFAMILY Protein kinase-like (PK-like) 573 881 IPR011009 -
Viun8g02107 951 MobiDBLite consensus disorder prediction 917 951 - -
Viun8g02107 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672|GO:0006468
Viun8g02107 951 ProSiteProfiles Leucine-rich repeat profile. 96 118 IPR001611 GO:0005515
Viun8g02107 951 Gene3D Ribonuclease Inhibitor 333 458 IPR032675 -
Viun8g02107 951 SMART LRR_typ_2 420 442 IPR003591 -
Viun8g02107 951 SMART LRR_typ_2 117 140 IPR003591 -
Viun8g02107 951 SMART LRR_typ_2 265 289 IPR003591 -
Viun8g02107 951 SMART LRR_typ_2 192 215 IPR003591 -
Viun8g02107 951 MobiDBLite consensus disorder prediction 451 485 - -
Viun8g02107 951 FunFam Receptor-like kinase TMK4 36 330 - -
Viun8g02107 951 SMART serkin_6 597 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02107 951 PANTHER OSJNBA0070M12.3 PROTEIN 23 951 - -
Viun8g02107 951 MobiDBLite consensus disorder prediction 451 486 - -
Viun8g02107 951 FunFam receptor protein kinase TMK1 675 892 - -
Viun8g02107 951 FunFam Leucine-rich repeat receptor-like kinase 334 457 - -
Viun8g02107 951 ProSiteProfiles Protein kinase domain profile. 597 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02107 951 SUPERFAMILY L domain-like 67 441 - -
Viun8g02107 951 CDD STKc_IRAK 603 876 - -
Viun8g02107 951 Gene3D Transferase(Phosphotransferase) domain 1 675 895 - -
Viun8g02107 951 MobiDBLite consensus disorder prediction 917 940 - -
Viun8g02107 951 Gene3D Ribonuclease Inhibitor 35 332 IPR032675 -
Viun8g02107 951 Gene3D Phosphorylase Kinase; domain 1 558 674 - -
Viun8g02107 951 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Viun8g02107 951 FunFam receptor protein kinase TMK1 559 674 - -
Viun8g02107 951 Pfam Leucine rich repeat N-terminal domain 36 68 IPR013210 -
Viun8g02107 951 Pfam Leucine rich repeat N-terminal domain 336 370 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02107 Viun-Chr8 31483751 31487858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02107 82 879 Receptor kinase-like Gene Family AT5G07280 30.788 4.46e-83 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Viun8g02107 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02107 K00924 - gmx:100789646 1610.51