Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02105 ATGAAACCAAACTTTGATCTTGAAGTTGAGGCATATGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTTTCCATTCAAGAAACCTCTATAGGTCCTTGCAGTGACCGCCTCACTAACATTTCCCACACCACAAATCTAACTGGGAGCCATCCTAATTCAGATTCTGTTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAGCCAGGGGGAAGAGACTCAATAGGATTCTCATTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCTTCTCAAACCACAGCAGCGACCATACCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAGTTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCCCACAAGAGAGAAAGAACATTAGCAAAAAGGGCTTTGAGAATGGGATTTTTCTCTGAAAGGTATGCCAATCTAGCATCTCTCCCTCTGCATGGTTCCTTTAGGTCTTTAGGAATAAAGGCACACTCTTCACTGCACCATGGTTTCTCACCAACAATGAGGCCTCCTGAGATAAAAAGCAACGCAAAATTTGATCAAGGGTATGTTGGCATCCCAATATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCAGGTAGTTTTCGTCAGGTTGTCGAGGCAGGTGATAGTCATCAGAATTTCATACTTACTGGAAGTTCAGATTTGAGTTTCACTGGGGTTAATCCACCTGTAGACATAGAAAACTCAACACCAGATTTGACTTTGAAACTTTGA 774 0.4315 MKPNFDLEVEAYAEYESEVSSQVASNVSIQETSIGPCSDRLTNISHTTNLTGSHPNSDSVSLDLTLNFKNSEPGGRDSIGFSFSSTSESSNEPASQTTAATIPRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYANLASLPLHGSFRSLGIKAHSSLHHGFSPTMRPPEIKSNAKFDQGYVGIPIFLEDDESDLLWPGSFRQVVEAGDSHQNFILTGSSDLSFTGVNPPVDIENSTPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02105 257 FunFam Zinc finger protein 2 83 152 - -
Viun8g02105 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Viun8g02105 257 MobiDBLite consensus disorder prediction 79 98 - -
Viun8g02105 257 Gene3D Classic Zinc Finger 84 149 - -
Viun8g02105 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Viun8g02105 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Viun8g02105 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 46 184 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02105 Viun-Chr8 31465348 31468204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02105 88 257 C2H2 Transcription Factor Family AT1G66140 51.244 2.07e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun8g02105 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02105 - - gmx:100794851 456.832