Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02089 ATGGCGATACAAGGCAAAAGTGCATTTACTAGATCAAGGGGTGGTCCTCCAATTGGAGATGAAATATGTTTGAGTCCTGGTGTGCATTCTGTTGCAGATATTCCACTTCATGATCAGTTTTCTTGTGGAAATGACTATGCCTTGAAGGTAAGAAAACCATACACAATCACAAAGCAGAGGGAGAGGTGGACAGATGAAGAACACAAGAAGTTTCTTGAAGCCTTAAAGCTATATGGCAGGGCCTGGCGAAGGATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCGTTAGAGAGTCCAGTGGGAACAGCACAACCTTGGATGAGTCGATTGAAATTCCACCTCCACGACCAAAAAGGAAGCCAATTCATCCTTACCCTCGTAAACTGATTGAGATTCCAAAGAAAGAGATTTCCAATTCAGAACACCCTCTGAGGTCTAATTCTCTCAAGTCATCAGATTTTGGTCAAGAGAACAATTCTCCCAAGTCAGTGTTATCTACAGTTATTTCCGAAAACCTTGGTTCCTCCGATTCAGACACACCCACAGGAAGTTTGTCACCGGTCTCATCCATTAGCGGTGTCCCCTCAAACAGATTTCCACTGGCTGAACCCAAAACATCATTTGAGGAAGAAGGGTCTCTACCAAGTTCAGCTCATGATGAGCAACCCCTTGTGAAACTGAAGCTTTTTCACAAAGAAACTGTTTGTACCAAAGATGATGCAGCAGAGGAATCATGTGGTCGTACTCTCAAACTTTTTGGGACCACTCTACTGGTAACAGATACAAGCAAACCCTTTTCTCTAAGAACGGAGCCATTCAAACCAATACCTGCGGCTGCAACATATCTTATGCAACTTCAAAATGGGTGTTCTGATCTTGCAGAAGGTCCTGCAAGTATTGTTCCAAGGTGGACTTTTTCCCATAATGCACTATCTGTGCCACTGAGGGAGCTAAAAGGGAAACACCTATACTCTAATGTCGGAGATTTTGAACAGAAAGAGGTTCAAAAGGAAGGATCATGGACTGGTTCAAACACTAGCTCAATTAATGATGGTGGAGACAACACTGTACCAAGTGAAACATCGGCTATATTTGAGCTAAGGGTGAGACCTAAAACCTGTGGGAAAGGGTTTGTGCCATACAAAAGGTGCATGGCAGAGAGAGAAAAAAACAAATACTCATCAGTTTGTGATGAGGAGAGGGAAGAGCAACGTATCAAGCTTTCCTTATAG 1272 0.4285 MAIQGKSAFTRSRGGPPIGDEICLSPGVHSVADIPLHDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKIVRESSGNSTTLDESIEIPPPRPKRKPIHPYPRKLIEIPKKEISNSEHPLRSNSLKSSDFGQENNSPKSVLSTVISENLGSSDSDTPTGSLSPVSSISGVPSNRFPLAEPKTSFEEEGSLPSSAHDEQPLVKLKLFHKETVCTKDDAAEESCGRTLKLFGTTLLVTDTSKPFSLRTEPFKPIPAAATYLMQLQNGCSDLAEGPASIVPRWTFSHNALSVPLRELKGKHLYSNVGDFEQKEVQKEGSWTGSNTSSINDGGDNTVPSETSAIFELRVRPKTCGKGFVPYKRCMAEREKNKYSSVCDEEREEQRIKLSL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02089 423 MobiDBLite consensus disorder prediction 155 209 - -
Viun8g02089 423 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Viun8g02089 423 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Viun8g02089 423 SMART sant 59 107 IPR001005 -
Viun8g02089 423 MobiDBLite consensus disorder prediction 350 370 - -
Viun8g02089 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Viun8g02089 423 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Viun8g02089 423 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Viun8g02089 423 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Viun8g02089 423 MobiDBLite consensus disorder prediction 116 233 - -
Viun8g02089 423 MobiDBLite consensus disorder prediction 125 154 - -
Viun8g02089 423 PANTHER SWI/SNF COMPLEX-RELATED 44 359 - -
Viun8g02089 423 CDD SANT 62 105 IPR001005 -
Viun8g02089 423 Gene3D - 62 109 - -
Viun8g02089 423 FunFam protein REVEILLE 6 isoform X1 62 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02089 Viun-Chr8 31293266 31296864 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun8g02089 Myb_DNA-binding 9.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02089 - - gmx:778060 668.692