Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02079 ATGGAGCAGGAACAACAAAACCTTGAAAGCTTCTTAACATGGGCAGCACAACTTGGAATATCAGACTCATCAACACCCACCAACCAACCTCAACACTCTCCTTCCTCATGTTTGGGTTCTTCTTTATGTGTCGCTCATTTTCCTCACTCTGGCGGGAGAGGTTTGGGTGCTGTGAGAGACCTTAGGAGAGGGGAAATCGTTCTCAGAGTTCCAAAATCTGCTTTAATGACAAGAGAGAATGTTATGGAAGATGAAAAGCTCTGTTTTGCTGTCAATAGACACTCTTGTCTATCCTCAACTCAGATATTGATCGTTTGCTTGTTGTATGAAATGGGTAAAGGGAAGACTTCAAGGTGGCATCCTTACCTAATGCATTTGCCACACACTTATGACATACTAGCCATGTTTGGTGAATTTGAGAAGCGTGCTCTGCAAGTGGATGAAGCGGTGTGGGTCACCGAAAAAGCTATACTAAAGGCCAAATCAGAGTGGAAAGAATCTCATGCTTTGATGGAAGATCTCATGTTTAGGCCCCAGTTTTTAACATTTAAGGCTTGGGTTTGGGCTGCTGCAACGATATCTTCTCGAACATTGCATATACCATGGGATGAAGCTGGGTGCTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGTCTGACATTGAGGATTTAGAACATTTGCTATCAAACTCTTCCATTCACGATACAAACTTATTAAATGGAGGCAAGAATATAATGGTAGATGCAGAACAGCTTGATTCTCATTCCCAAAGATTAACTGATGGTGGGTTTGAGGAAGATGTTAATGCATATTGCTTCTATGCCAGGGCACATTACAAGAAAGGCGATCAGGTTCTATTATGCTATGGAACTTACACAAACTTGGAGCTTCTTGAACACTATGGCTTTCTCCTACAAGAAAATCCAAATGACAAAGTTTTTATCCCTTTGGAACCAACTATATATCTTTCCACTTCATGGTCTATGGAATCACTCTATATCCATCATAATGGGAAGCCTTCATTTGCACTACTTGCTGCATTGCGGTTGTGGGCAACCCCTCAAAACAAGAGGAAGTCTGTAGGACATCTTGTGTATTCTGGTTCCCAAGTGTCAGCAGACAATGAAATTTTCATCACGAAATGGCTGTCCAAAACTTGTGCCACTGTGTTAAAGAATCTGCCGACATCTATTGATGAAGACACCTTGCTCTTGAATGCAATGCACAGTAGCCAAGATTTTTTCACTTTCATGGAGATCACAAAATCTATGTCTTCCAGGGATGAGATCTATACCTTCTTAGAAGCACATGATATGAAAGATGCACATAGTTTCACTGACGAAATATTATCTAGAAAAGCAAGAAGGTCCATGGATAGGTGGAAATTAGCTGTCCAATGGAGGCTGAAGTATAAGAAAGTCCTCTTTGATTCTATCTCTTATTGTACTGAAATACTTGATTCTTTCATAAAATAA 1491 0.4071 MEQEQQNLESFLTWAAQLGISDSSTPTNQPQHSPSSCLGSSLCVAHFPHSGGRGLGAVRDLRRGEIVLRVPKSALMTRENVMEDEKLCFAVNRHSCLSSTQILIVCLLYEMGKGKTSRWHPYLMHLPHTYDILAMFGEFEKRALQVDEAVWVTEKAILKAKSEWKESHALMEDLMFRPQFLTFKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEESDIEDLEHLLSNSSIHDTNLLNGGKNIMVDAEQLDSHSQRLTDGGFEEDVNAYCFYARAHYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLEPTIYLSTSWSMESLYIHHNGKPSFALLAALRLWATPQNKRKSVGHLVYSGSQVSADNEIFITKWLSKTCATVLKNLPTSIDEDTLLLNAMHSSQDFFTFMEITKSMSSRDEIYTFLEAHDMKDAHSFTDEILSRKARRSMDRWKLAVQWRLKYKKVLFDSISYCTEILDSFIK 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02079 496 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 305 480 IPR036464 -
Viun8g02079 496 Gene3D - 326 494 IPR036464 -
Viun8g02079 496 Pfam Rubisco LSMT substrate-binding 344 480 IPR015353 -
Viun8g02079 496 SUPERFAMILY SET domain 7 313 IPR046341 -
Viun8g02079 496 FunFam Protein SET DOMAIN GROUP 40 8 309 - -
Viun8g02079 496 ProSiteProfiles SET domain profile. 40 295 IPR001214 GO:0005515
Viun8g02079 496 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 430 - -
Viun8g02079 496 Pfam SET domain 52 295 IPR001214 GO:0005515
Viun8g02079 496 Gene3D set domain protein methyltransferase, domain 1 4 309 - -
Viun8g02079 496 CDD SET_LSMT 41 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02079 Viun-Chr8 31233620 31237339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02079 52 337 NAC Transcription Factor Family AT3G56570 22.321 3.20e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun8g02079 SET 9.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02079 - - gmx:100787452 887.871