Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02062 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAAAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGAACTCGTGTGGTCTATTTCCCTCAAGGTCATAGCGAGCAGGTTGCTGCCACAACTAACCGAGAAGTGGATGGTCACATACCCAATTATCCCAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACGCATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCTGCTCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTCCGACATATTTTTCGAGGACAGCCAAAACGACACCTTCTTACAACTGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTAGTGGCTGGGGATTCTGTGCTTTTTATATGGAACGAAAAGAATCAGCTTCTTTTGGGAATACGGAGAGCCAATCGACCGCAAACTGTCATGCCATCCTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGCTTTACAGTGTTCTATAACCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCACACACGAGTGTCTGTTGGTATGCGTTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTACGCAGGTACATGGGTACTATAACTGGCATAAGTGACTTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGGTCTGTTAAGGTTGGCTGGGATGAATCAACTGCAGGAGAGAGACAGCCACGAGTATCATTGTGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCACTGTTTCCTCTTAGATTGAAACGTCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCGACGAATGGGCTAATGTGGCTGAGGGGTGGACCTGGAGACCAAGGTCTCAATTCCCTGAGTTTTCAAGGGTCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGACCCAACTTTGCTAGGAAGTGATCATAATCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACATAGGGAGTGGAGATTTGATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAACTATGTTCAACAATCAGGAAACCCCAATCCTTCCTTGCAGCTTCAGCAACCACAAGCAATTCAGCAATCGGTATCTTCCAATAATATCCTACAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCTCAGCATCTCCTTCAAAAATCACACAATCGCGAAGATCAAACACAGCAGCAGCAGCAGCACACTTATCAAGATACGGTTTTACTTCAAAGTGATCAGCTTCATCAAAGGCAACACTCTGGTTTACCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTACCGTTTCACCAGGACAAAATATGCTGAGTTCACTTTGTCCCGAAGGGAGTGGCAGTCTCTTGAATCTATCCAGAAGTGGTCAGTCAATGCTGACTGAACAACAGTTACCCCAACAATCATGGGCCCCAAAGTTTACACCTTTGCAGGTCAACACTTTTGGCAACTCAATGCCCCATGTGCAATATTCTGGAAAAGATACCACAATGGTGTCACCACACTGTAACTCTGACACCCAAAATCCTATTCTATTTGGTGTCAACATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACCACCGCATCAGCTGATACCGATGCATCAGCAATACCATTAGGGGAGTCTGGATTCCAAGCTCCTCTATATCCTTGCGTCCAAGATTCATCAGAGTTGTTGCGAAGTGCAGGGCAAGTTGACCCTCAAAACCAGACACGAACATTTGTCAAGGTTTACAAATCAGGGTCGGTAGGGCGGTCTCTTGACATCTCCCGGTTCAGCAGTTATCATGAGCTGAGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTGAATAATGTTTGGTACATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAAGCCGTGGAATCCCTTGGTCCAAGTTCAGGACAGAGGCTGAATAGCACTGGTGCTGATTCCCATGAAATTGTTTCTGGACTTCCATCAATAGGCTCCCTTGAATACTGA 2538 0.4586 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQGLNSLSFQGSGLLPWMQQRMDPTLLGSDHNQQYQAMFASGLQNIGSGDLMRQQMMNFQQPFNYVQQSGNPNPSLQLQQPQAIQQSVSSNNILQPQAQVLAENLSQHLLQKSHNREDQTQQQQQHTYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSSMKFPATVSPGQNMLSSLCPEGSGSLLNLSRSGQSMLTEQQLPQQSWAPKFTPLQVNTFGNSMPHVQYSGKDTTMVSPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADTDASAIPLGESGFQAPLYPCVQDSSELLRSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHEIVSGLPSIGSLEY 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02062 845 FunFam Auxin response factor 714 808 - -
Viun8g02062 845 SUPERFAMILY CAD & PB1 domains 717 793 - -
Viun8g02062 845 ProSiteProfiles PB1 domain profile. 719 803 IPR000270 GO:0005515
Viun8g02062 845 MobiDBLite consensus disorder prediction 543 562 - -
Viun8g02062 845 Gene3D - 292 364 - -
Viun8g02062 845 Pfam AUX/IAA family 716 803 IPR033389 -
Viun8g02062 845 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Viun8g02062 845 SMART B3_2 128 230 IPR003340 GO:0003677
Viun8g02062 845 MobiDBLite consensus disorder prediction 543 560 - -
Viun8g02062 845 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 808 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun8g02062 845 FunFam Auxin response factor 292 364 - -
Viun8g02062 845 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Viun8g02062 845 CDD B3_DNA 127 228 IPR003340 GO:0003677
Viun8g02062 845 Gene3D - 715 808 - -
Viun8g02062 845 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Viun8g02062 845 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun8g02062 845 Gene3D - 126 229 IPR015300 -
Viun8g02062 845 FunFam Auxin response factor 126 230 - -
Viun8g02062 845 MobiDBLite consensus disorder prediction 812 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02062 Viun-Chr8 31137595 31148843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02062 98 816 B3 DNA Binding Superfamily AT5G37020 68.219 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun8g02062 AUX_IAA 1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02062 - - vun:114193813 1677.53