Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02040 ATGAAAGATAATTTTGAATTCCGGGTTCGGGTTATTGCCGCTTTGGGTTTACTTGTTGGGGCTAAGGTTTTGAATGTTCAGGTCCCGTTCTTGTTCAAGCTTGCAGTTGATTCGCTGACGACTGCTTCGGGGAATGCTGCTGCTCTTGCTTCGAGTTCAAGTGGGTTGGCTCTTTTTGCAACCCCAGTGGCAGTGTTGGTTGGATATGGGATTGCGCGTTCAGGAGCCTCTGCTTTCAATGAACTGCGGACTGCTATATTTTCTAAGGTTGCACTGCGGACAATTCGATTAGTATCAAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGCCGAGAAACTGGTGCATTAAGTAGAATAATTGATCGCGGTAGTCGTGGAATAAGTTTCATTCTCTACTCTATGGTGTTCAATGTAGTGCCTACCATATTAGAGATATCTATGGTAGCAGGTATACTGGCCTACAAATTTGGAGCTCCCTTTGCGCTGATTACTTCCTCATCAGTTGCTGCTTATGTTATTTTCACTTTGTCTATCACACAGTGGAGGACTAAGTTCCGGAAAACCATGAACAGGGCTGATAATGATGCTAGTACAAGGGTTATTGACTCACTTATTAATTACGAGACTGTCAAATATTTTAATAATGAAGTTTATGAAGCTGATAATTATGACAAGTACCTAAAGAGATATGAGGATGCTGCTTTGAAAACCCAACAAAGTCTTGCTGTATTGAATTTTGGTCAAAATTTTATATTTAGTGCTGCTCTTTCATCGGCCATGGTGCTGTGCTCTCATGGGATCATGGATGGAACGATGACTGTTGGTGATTTGGTAATGGTGAATGGGCTTCTCTTCCAATTATCACTTCCACTTAATTTCCTTGGTAGTGTTTTTCGTGAGACTGTACAGAGTTTAGTTGACATGAAATCCATGTTTCAGTTACTCGAGGAAAGAGCAGACATTAGGGATAAAGAAAATGCACAGACTCTCAAATATAATGGGGGGAGTATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCATTTGTTGTGCCAGCGGGTAAAAGTGTTGCAATTGTTGGAACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTCTTTGATCCTAATTCTGGAAGTATAAAGATAGATAATCAAGATATTCGGGAGGTAACCCTTGAGAGTTTGCGGAAGTCCATTGGTGTTGTTCCACAAGATACTGTACTTTTTAATGATACTATATTTCACAACATCCACTATGGTCGGCTTTCTGCAACAAAAGAGGAGGTCTATGAAGCTGCTCAACAAGCAGCGATTCATAACACTATCATGAATTTTCCTGATCAATATTCAACTGTTGTCGGGGAGCGAGGGCTCAAGTTGAGTGGTGGTGAGAAGCAACGTGTTGCCTTGGCTCGTTCATTCTTAAAAGCACCTGCAATTCTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACTACAGAAGCAGAGATTTTAAGTGCATTAAAATCCGTAGCAAAAAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATTATTGTTCTGGAAAATGGGAAGGTGGTTGAGCAAGGACCACATGAAGAGCTGTTATCAAAAGCAGGAAGATATGCACAACTGTGGGGACAACAAAATAACTCAATTGATGCAATTGATACAGCCATTGATGTAGGAGCACAATAA 1785 0.4078 MKDNFEFRVRVIAALGLLVGAKVLNVQVPFLFKLAVDSLTTASGNAAALASSSSGLALFATPVAVLVGYGIARSGASAFNELRTAIFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRGISFILYSMVFNVVPTILEISMVAGILAYKFGAPFALITSSSVAAYVIFTLSITQWRTKFRKTMNRADNDASTRVIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQQSLAVLNFGQNFIFSAALSSAMVLCSHGIMDGTMTVGDLVMVNGLLFQLSLPLNFLGSVFRETVQSLVDMKSMFQLLEERADIRDKENAQTLKYNGGSIQFENVHFSYLTERKILDGISFVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPNSGSIKIDNQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAAQQAAIHNTIMNFPDQYSTVVGERGLKLSGGEKQRVALARSFLKAPAILLCDEATSALDSTTEAEILSALKSVAKNRTSIFIAHRLTTAMQCDEIIVLENGKVVEQGPHEELLSKAGRYAQLWGQQNNSIDAIDTAIDVGAQ 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02040 594 CDD ABC_6TM_ATM1_ABCB7 14 317 - -
Viun8g02040 594 CDD ABCC_ATM1_transporter 343 578 - -
Viun8g02040 594 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 577 IPR003439 GO:0005524
Viun8g02040 594 ProSitePatterns ABC transporters family signature. 480 494 IPR017871 GO:0005524|GO:0016887
Viun8g02040 594 Gene3D - 334 589 IPR027417 -
Viun8g02040 594 FunFam ATP-binding cassette sub-family B member 7 1 331 - -
Viun8g02040 594 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 12 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun8g02040 594 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 574 IPR039421 -
Viun8g02040 594 Pfam ABC transporter 359 508 IPR003439 GO:0005524
Viun8g02040 594 Gene3D ABC transporter type 1, transmembrane domain 1 333 IPR036640 GO:0005524|GO:0016020
Viun8g02040 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 578 IPR027417 -
Viun8g02040 594 SMART AAA_5 368 554 IPR003593 GO:0016887
Viun8g02040 594 FunFam ABC transporter B family member 25 335 589 - -
Viun8g02040 594 Pfam ABC transporter transmembrane region 12 296 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun8g02040 594 SUPERFAMILY ABC transporter transmembrane region 7 322 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02040 Viun-Chr8 30993402 31013347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02040 179 574 Calmodulin-binding Proteins AT2G36910 37.101 8.65e-68 237