Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02039 ATGCTTGCTGCTGCTGCTTCAGCTTCTCGGCACCTTCTTCAACGCGATGCCAGCATCGGTGCTTGCAGTGGCAGTGGCAATCGAGTTCGCTCTCTTTTTACAGTTTCTGTGATCGCCACAACCTACCCAAGTCGCACTAGAACATGTTGCAGTCATGGTTATGGAATCAGTTTCAATGCCCCAAAACACAGAGCGTGCCCAGGTTTACTTTTTGCTGTAAAGGGGTTCCTCTCTGATTCATCAAATTCTAATTCTCCACATGGCAGAGTTCCCAGACCTCACTTACCACATCCCAGTTCAAGTGTGGATGGGCGAGCATTTTTCTCAACTTCAGCTAAAGATGATGGAAACCAAAGTCAAAAGGCTGCTTCTTCCACCATTCCTAAACCACCACCATCACTTCCTGATGGGAAAGTTGCTGATGTGAAGATCCTTCGCACACTAGCCAGTTACCTTTGGATGAAAGATAATTTTGAATTCCGGGTTCGGGTTATTGCCGCTTTGGGTTTACTTGTTGGGGCTAAGGTTTTGAATGTTCAGGTCCCGTTCTTGTTCAAGCTTGCAGTTGATTCGCTGACGACTGCTTCGGGGAATGCTGCTGCTCTTGCTTCGAGTTCAAGTGGGTTGGCTCTTTTTGCAACCCCAGTGGCAGTGTTGGTTGGATATGGGATTGCGCGTTCAGGAGCCTCTGCTTTCAATGAACTGCGGACTGCTATATTTTCTAAGGTTGCACTGCGGACAATTCGATTAGTATCAAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGCCGAGAAACTGGTGCATTAAGTAGAATAATTGATCGCGGTAGTCGTGGAATAAGTTTCATTCTCTACTCTATGGTGTTCAATGTAGTGCCTACCATATTAGAGATATCTATGGTAGCAGGTATACTGGCCTACAAATTTGGAGCTCCCTTTGCGCTGATTACTTCCTCATCAGTTGCTGCTTATGTTATTTTCACTTTGTCTATCACACAGTGGAGGACTAAGTTCCGGAAAACCATGAACAGGGCTGATAATGATGCTAGTACAAGGGTTATTGACTCACTTATTAATTACGAGACTGTCAAATATTTTAATAATGAAGTTTATGAAGCTGATAATTATGACAAGTACCTAAAGAGATATGAGGATGCTGCTTTGAAAACCCAACAAAGTCTTGCTGTATTGAATTTTGGTCAAAATTTTATATTTAGTGCTGCTCTTTCATCGGCCATGGTGCTGTGCTCTCATGGGATCATGGATGGAACGATGACTGTTGGTGATTTGGTAATGGTGAATGGGCTTCTCTTCCAATTATCACTTCCACTTAATTTCCTTGGTAGTGTTTTTCGTGAGACTGTACAGAGTTTAGTTGACATGAAATCCATGTTTCAGTTACTCGAGGAAAGAGCAGACATTAGGGATAAAGAAAATGCACAGACTCTCAAATATAATGGGGGGAGTATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCATTTGTTGTGCCAGCGGGTAAAAGTGTTGCAATTGTTGGAACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTCTTTGATCCTAATTCTGGAAGTATAAAGATAGATAATCAAGATATTCGGGAGGTAACCCTTGAGAGTTTGCGGAAGTCCATTGGTGTTGTTCCACAAGATACTGTACTTTTTAATGATACTATATTTCACAACATCCACTATGGTCGGCTTTCTGCAACAAAAGAGGAGGTCTATGAAGCTGCTCAACAAGCAGCGATTCATAACACTATCATGAATTTTCCTGATCAATATTCAACTGTTGTCGGGGAGCGAGGGCTCAAGTTGAGTGGTGGTGAGAAGCAACGTGTTGCCTTGGCTCGTTCATTCTTAAAAGCACCTGCAATTCTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACTACAGAAGCAGAGATTTTAAGTGCATTAAAATCCGTAGCAAAAAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATTATTGTTCTGGAAAATGGGAAGGTGGTTGAGCAAGGACCACATGAAGAGCTGTTATCAAAAGCAGGAAGATATGCACAACTGTGGGGACAACAAAATAACTCAATTGATGCAATTGATACAGCCATTGATGTAGGAGCACAATAA 2244 0.422 MLAAAASASRHLLQRDASIGACSGSGNRVRSLFTVSVIATTYPSRTRTCCSHGYGISFNAPKHRACPGLLFAVKGFLSDSSNSNSPHGRVPRPHLPHPSSSVDGRAFFSTSAKDDGNQSQKAASSTIPKPPPSLPDGKVADVKILRTLASYLWMKDNFEFRVRVIAALGLLVGAKVLNVQVPFLFKLAVDSLTTASGNAAALASSSSGLALFATPVAVLVGYGIARSGASAFNELRTAIFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRGISFILYSMVFNVVPTILEISMVAGILAYKFGAPFALITSSSVAAYVIFTLSITQWRTKFRKTMNRADNDASTRVIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQQSLAVLNFGQNFIFSAALSSAMVLCSHGIMDGTMTVGDLVMVNGLLFQLSLPLNFLGSVFRETVQSLVDMKSMFQLLEERADIRDKENAQTLKYNGGSIQFENVHFSYLTERKILDGISFVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPNSGSIKIDNQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAAQQAAIHNTIMNFPDQYSTVVGERGLKLSGGEKQRVALARSFLKAPAILLCDEATSALDSTTEAEILSALKSVAKNRTSIFIAHRLTTAMQCDEIIVLENGKVVEQGPHEELLSKAGRYAQLWGQQNNSIDAIDTAIDVGAQ 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02039 747 MobiDBLite consensus disorder prediction 106 135 - -
Viun8g02039 747 ProSitePatterns ABC transporters family signature. 633 647 IPR017871 GO:0005524|GO:0016887
Viun8g02039 747 Pfam ABC transporter transmembrane region 165 449 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun8g02039 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 731 IPR027417 -
Viun8g02039 747 CDD ABCC_ATM1_transporter 496 731 - -
Viun8g02039 747 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 496 730 IPR003439 GO:0005524
Viun8g02039 747 CDD ABC_6TM_ATM1_ABCB7 167 470 - -
Viun8g02039 747 MobiDBLite consensus disorder prediction 106 127 - -
Viun8g02039 747 Pfam ABC transporter 512 661 IPR003439 GO:0005524
Viun8g02039 747 Gene3D ABC transporter type 1, transmembrane domain 151 486 IPR036640 GO:0005524|GO:0016020
Viun8g02039 747 MobiDBLite consensus disorder prediction 82 101 - -
Viun8g02039 747 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 165 462 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun8g02039 747 FunFam ABC transporter B family member 25 488 742 - -
Viun8g02039 747 SUPERFAMILY ABC transporter transmembrane region 148 475 IPR036640 GO:0005524|GO:0016020
Viun8g02039 747 Gene3D - 487 742 IPR027417 -
Viun8g02039 747 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 147 727 IPR039421 -
Viun8g02039 747 SMART AAA_5 521 707 IPR003593 GO:0016887
Viun8g02039 747 FunFam ATP-binding cassette sub-family B member 7 136 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02039 Viun-Chr8 30993402 31013789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02039 332 732 Calmodulin-binding Proteins AT2G36910 36.893 1.85e-66 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02039 K05662 - gmx:100779975 1265.75