Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02032 ATGTTCCACTTCTCTTCCTTCCTTCCATCTCAAAGCAAGTTCTGTTCACTCCATTGGTTGTTCCATTTCTCTTCCGTTCCGCAGATGGCAACGCGCCGCACAACCAACACTTACGAAGAGGCTAGAAAACTGAGACTTGAAGAAAATAAAAAGAGATTTGAGGACTTGGGAATTTTAAGGATTTCAAAAAATTTGACCGAGATCACAAGGTCTGGAAAGAAGACACAGCATCATGTTTCTAAACCGAAATCAAAGAAGACAAATCCTGAAGTGGAACTTAGACGATCTTCACGTGTTCGGAACCCAGTTCCTTCGTACACGGAAGATGTGAACGTACATCTTCCAGCTTCGCGGAAGAGGTCAAGATCAAATTCTTCAACATGGGGAAGTTACAATGTGAGACCTTTAGATGAAATCAAAGAAGCTTCAGAAGAGGAAAGACGTTGTGCTCTGGAGGCTGCAGAAGAACTCCAAACCGATTTGAACTCTTCAAATCCTTGTTTTATCAAGTCAATGGTTCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGCCTTCCTTCCAAGTTTTGTGAGGAACATCTTCCAAAAACTGTACATAACATGGTTTTAGAAGATGAAAAGGGCTCAGAATACCAGGCTGTTTACATAGGCAACAGAGCTGGATTAAGCGGTGGCTGGAGAGCATTTGCGTTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGGTTGAAGCTTCGAGATTTAAGATTTATATTGTTAGAGCATTTCCAGATCTAGTTGAAGAGAAGGGAAATGATGTTTTAGTTGAAGAAGGAAATACGCATGCAACCAAAGTACCAAAAGCTAAATGTAACCTTAAGTCAGATAAGACTAAAAAGCCAAGACAAGCAGCAGCATATGAAACTAATGAATCAGAGAGTTCTCAAGAGCATATTGACAAAGAAGTCAACCCACAAGGTGTAAATCCAACCAAGCAAACTAAAATCTCGAAGAGAAAAACACAAAAGAAATCTATGCCTCTAGCTACTGCAGATTTGAAAGGGGAAGTGCAAATGAAAACTGAGAAACCAAGAGTGTCTCTAGAGCTGTCAAACAAGACAATGAAGTCAAGGGGTATCAATGAAATTGACGATTCAGGCGAGTTAGAAAAGAAAAGTTTTGTTCATGATGCTGATGACAAGTTAGAAAAGGTTGAAGAAGCAAGCAAATGTGTGACACGGAATGCTAGAAAAAAGCCAGCACCAAAGTATTTCAGAAAGAAAGCATGA 1278 0.4006 MFHFSSFLPSQSKFCSLHWLFHFSSVPQMATRRTTNTYEEARKLRLEENKKRFEDLGILRISKNLTEITRSGKKTQHHVSKPKSKKTNPEVELRRSSRVRNPVPSYTEDVNVHLPASRKRSRSNSSTWGSYNVRPLDEIKEASEEERRCALEAAEELQTDLNSSNPCFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVHNMVLEDEKGSEYQAVYIGNRAGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYIVRAFPDLVEEKGNDVLVEEGNTHATKVPKAKCNLKSDKTKKPRQAAAYETNESESSQEHIDKEVNPQGVNPTKQTKISKRKTQKKSMPLATADLKGEVQMKTEKPRVSLELSNKTMKSRGINEIDDSGELEKKSFVHDADDKLEKVEEASKCVTRNARKKPAPKYFRKKA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02032 425 SMART B3_2 168 259 IPR003340 GO:0003677
Viun8g02032 425 MobiDBLite consensus disorder prediction 285 302 - -
Viun8g02032 425 MobiDBLite consensus disorder prediction 69 105 - -
Viun8g02032 425 ProSiteProfiles B3 DNA-binding domain profile. 168 259 IPR003340 GO:0003677
Viun8g02032 425 MobiDBLite consensus disorder prediction 83 97 - -
Viun8g02032 425 Pfam B3 DNA binding domain 168 256 IPR003340 GO:0003677
Viun8g02032 425 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 79 258 IPR044837 -
Viun8g02032 425 MobiDBLite consensus disorder prediction 283 341 - -
Viun8g02032 425 Coils Coil 140 160 - -
Viun8g02032 425 SUPERFAMILY DNA-binding pseudobarrel domain 163 257 IPR015300 -
Viun8g02032 425 CDD B3_DNA 166 257 IPR003340 GO:0003677
Viun8g02032 425 Gene3D - 142 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02032 Viun-Chr8 30941194 30946072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02032 38 258 B3 DNA Binding Superfamily AT5G58280 53.012 3.21e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun8g02032 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02032 - - vra:106764146 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02032 8 30941194 30946072 Viun8g02032 8 30941194 30946072 ECH