Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02028 ATGACAACCATTGATTTATCAAACAACAAGCTCAATGGAACAATTCCATCCTACTTTTCTGGTCTTCCACGTCTTCAGAAATTGTCAATTGCCAACAATGCAATCAGTGGTACTGTTCCTTCTACCATTTGGCAGAACAGGACTTTAAATGCAACAGAGCAACTTATCTTGAACATGCAAAATAATCAACTTACAAGCATATCAGGCACTACAAATCTTCCTCCAAATGTCACACTTATGCTTCAGGGAAATCGTGTATGTTTGAATAACAACTCCCTAGTTCAGCTTTGTGGAGGTGAAAGTGACAATAACATGGATGGAGGCTCCAGTGTTCTGTGTCCAAGTCAAGGATGTCCCCCTCCTTATGAATACACTGTGGAGTGTATCTGTGCTGCCCCATTGATTGTTCATTATCGGTTGAAAAGTCCAGGTTTTTCAGATTTCCGTGAATATGTGACAGAATTTGAGAGCTTCCTGACAAATGGTCTTAGTGTGCATACTAATCAGCTGTTCATTGAGCGTTTTACGTGGGAAGAAGGGCGATTGAGAATGAACCTGAAGCTTTTCCCAGAATATATTGACAATACAAGTTCTCGTCAGTTCAGTAAAAATGAGGTTGTTCGGATTAGAGACATGTTCAGAGAATGGGATATTAGTGACAGTGACCTGTTTGGTCCTTATGAACTCTTGGACTTCGTTCTACTGGATATTTATAGCGAAGCGATTACTCCGTCTTCAAGTTCAGGGATAAGCAAAGGTGCACTGGCTGGAATAATCTTAGGTGCAATTGCCTGTGCAGTTACATTATCGGCAATTGTTTCCATTCTTATTTTGAGAGTACGCATGAGAGATTATCATGCACTTTCCAAAAGGCGTAACGCATCTAGGATCTCGATAAGAGTTGAAGGTGTAAGATCATTTGATTACAAAGAAATGGCCTTGGCCACAAACAATTTTAGCCAGTCTGCTCAGATAGGAGAAGGGGGCTATGGGAAGGTTTATAAAGGTCGTCTTCCTGATGGCACTGTTGTAGCCATAAAACGTGCACAGGAGGGTTCACTGCAAGGTGAGAGGGAGTTCTTTACAGAAATAGAATTGCTGTCAAGGTTACACCATCGCAACCTTGTGTCTCTCATTGGATACTGTGATGAAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCAAATGGAACCCTAAGGGATCATCTTTCTGCTCATTCAAAAGATGCTCTTAGTTTTTCTCTGAGGTTAAAGATTGGTCTGGGATCAGCAAAAGGTCTTCTATATCTGCACACAGAAGCTAATCCTCCGATATTCCACCGAGACGTGAAAGCCAGCAATATATTACTGGACACAAGGTACACAGCAAAAGTTGCTGATTTTGGTCTTTCACGGCTTGCTCCAGTTCCAGATATTGAAGGAAATGTACCTGCTCATGTATCCACAGTAGTAAAGGGCACCCCGGGTTATCTTGATCCAGAGTACTTCTTAACTCGTAATTTGACCGACAAAAGTGATGTTTATAGTTTGGGTGTTGTATTTCTGGAACTTTTGACTGCGAGGCCACCAATCTTTCACGGTGAAAATATTATTAGACAGGTTAATATGACATACCAATCAGGTGGAATATCTCGAGTAGTTGATAAACGTATCGAGTCTTATCCATCTGAGTATGCAGAGAGATTTTTGACTTTAGCCTTAAAGTGTTGCAAAGATTCACCAGATGAGAGACCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAATACATCTATTCTATGTTACCCGATTCAGATACCAAGGGAGTTGAATATGTTACAAGTGATTCTTCTGGCACAATATTCAGTTCACAACCTTCATCATCTATTATAAAGACTCCTTTTATTTCCGGAGATGTGTCAGGTAGTGACCTTGTCAGTGGAACCATACCAACCATCAAGCCAAGATAG 1950 0.4087 MTTIDLSNNKLNGTIPSYFSGLPRLQKLSIANNAISGTVPSTIWQNRTLNATEQLILNMQNNQLTSISGTTNLPPNVTLMLQGNRVCLNNNSLVQLCGGESDNNMDGGSSVLCPSQGCPPPYEYTVECICAAPLIVHYRLKSPGFSDFREYVTEFESFLTNGLSVHTNQLFIERFTWEEGRLRMNLKLFPEYIDNTSSRQFSKNEVVRIRDMFREWDISDSDLFGPYELLDFVLLDIYSEAITPSSSSGISKGALAGIILGAIACAVTLSAIVSILILRVRMRDYHALSKRRNASRISIRVEGVRSFDYKEMALATNNFSQSAQIGEGGYGKVYKGRLPDGTVVAIKRAQEGSLQGEREFFTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSAHSKDALSFSLRLKIGLGSAKGLLYLHTEANPPIFHRDVKASNILLDTRYTAKVADFGLSRLAPVPDIEGNVPAHVSTVVKGTPGYLDPEYFLTRNLTDKSDVYSLGVVFLELLTARPPIFHGENIIRQVNMTYQSGGISRVVDKRIESYPSEYAERFLTLALKCCKDSPDERPKMAEVARELEYIYSMLPDSDTKGVEYVTSDSSGTIFSSQPSSSIIKTPFISGDVSGSDLVSGTIPTIKPR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02028 649 SUPERFAMILY Protein kinase-like (PK-like) 304 610 IPR011009 -
Viun8g02028 649 Gene3D Phosphorylase Kinase; domain 1 289 394 - -
Viun8g02028 649 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 607 - -
Viun8g02028 649 Pfam Leucine rich repeat 2 47 IPR001611 GO:0005515
Viun8g02028 649 SMART serkin_6 319 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02028 649 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Viun8g02028 649 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 395 604 - -
Viun8g02028 649 ProSiteProfiles Protein kinase domain profile. 319 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02028 649 Gene3D Ribonuclease Inhibitor 1 87 IPR032675 -
Viun8g02028 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Viun8g02028 649 Pfam Protein kinase domain 320 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02028 649 CDD STKc_IRAK 325 589 - -
Viun8g02028 649 Gene3D Transferase(Phosphotransferase) domain 1 395 607 - -
Viun8g02028 649 FunFam Leucine-rich repeat protein kinase family protein 283 394 - -
Viun8g02028 649 SUPERFAMILY L domain-like 2 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02028 Viun-Chr8 30881454 30885356 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02028 1 601 Receptor kinase-like Gene Family AT5G01950 54.309 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Viun8g02028 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02028 - - gmx:100801035 1031.94