Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02023 ATGAGGGAAAGAAAAGCAAAACCCTGTTCAGTTCAGGAGAGACAATCTAAAGGCCTTGTGTTTTCTGGGTTTTCTGGGATGTATCTTTCAAAGGGTTGTAGGTGTGAGGTTGTTCTCTGTTTCTGGTTTTTCTGCTATTTCTTATTGGCTGCTAGTCAGGTCACTGACCCTACAGAAGTTGAGGCATTAAGAACCATAAAGAGAAGTTTGTTTGATATTAATGGAAATTTGAGCAACTGGGATCGTGGAGATCCATGTACATCCAACTGGATAGGGGTTATGTGCTCCAATACAACATTAGCCGATGGCAATTTACATGTTCTACAATTGCAACTACTGAATTTGAACCTGTCTGGAACTTTGGCACCTGAGATCGGCAACTTGTCTTATTTGGAAATAGTGGACTTTATGTGGAATGACATTACTGGGAGTATACCGAAGGAGATTGGCAATATCAAAACTTTGAAACTCTTACTCCTGAGTGGAAATAAACTAACAAATGATCTGCCTGATGAGCTTGGCCATCTTCCAGCGCTGGAGAGAATGCAAATTGATGAGAACAAGATTACAGGACCCATACCACTATCATTTGCAAACCTGAACAGCACAAAACACTTCCACATGAACAACAATTCACTTAGTGGACAAATCCCAGCACAGCTTTCCCAATTAGGAAGCCTTATTCACCTTCTTCTTGACAACAATAACTTGACAGGAAATCTCCCATCCGAGCTCTCTGAGATGCCAAGCTTAACAATACTTCAACTCGATAACAATAACTTCGAAGGAAGTAGCATACCAGAATCTTATGCCAACATGCCAAAATTGTTGAAATTAAGCCTTAGGAACTGCAACTTGACAGGATCAATTCCTGATTTCAGCAGGATACCACACCTTGCTTACCTTGACCTCAGTTTCAATCAATTGAATGAATCAATTCCTACCAATAAGCTATCAGACAATATGACAACCATTGATTTATCAAACAACAAGCTCAATGGAACAATTCCATCCTACTTTTCTGGTCTTCCACGTCTTCAGAAATTGTCAATTGCCAACAATGCAATCAGTGGTACTGTTCCTTCTACCATTTGGCAGAACAGGACTTTAAATGCAACAGAGCAACTTATCTTGAACATGCAAAATAATCAACTTACAAGCATATCAGGCACTACAAATCTTCCTCCAAATGTCACACTTATGCTTCAGGGAAATCGTGTATGTTTGAATAACAACTCCCTAGTTCAGCTTTGTGGAGGTGAAAGTGACAATAACATGGATGGAGGCTCCAGTGTTCTGTGTCCAAGTCAAGGATGTCCCCCTCCTTATGAATACACTGTGGAGTGTATCTGTGCTGCCCCATTGATTGTTCATTATCGGTTGAAAAGTCCAGGTTTTTCAGATTTCCGTGAATATGTGACAGAATTTGAGAGCTTCCTGACAAATGGTCTTAGTGTGCATACTAATCAGCTGTTCATTGAGCGTTTTACGTGGGAAGAAGGGCGATTGAGAATGAACCTGAAGCTTTTCCCAGAATATATTGACAATACAAGTTCTCGTCAGTTCAGTAAAAATGAGGTTGTTCGGATTAGAGACATGTTCAGAGAATGGGATATTAGTGACAGTGACCTGTTTGGTCCTTATGAACTCTTGGACTTCGTTCTACTGGATATTTATAGCGAAGCGATTACTCCGTCTTCAAGTTCAGGGATAAGCAAAGGTGCACTGGCTGGAATAATCTTAGGTGCAATTGCCTGTGCAGTTACATTATCGGCAATTGTTTCCATTCTTATTTTGAGAGTACGCATGAGAGATTATCATGCACTTTCCAAAAGGCGTAACGCATCTAGGATCTCGATAAGAGTTGAAGGTGTAAGATCATTTGATTACAAAGAAATGGCCTTGGCCACAAACAATTTTAGCCAGTCTGCTCAGATAGGAGAAGGGGGCTATGGGAAGGTTTATAAAGGTCGTCTTCCTGATGGCACTGTTGTAGCCATAAAACGTGCACAGGAGGGTTCACTGCAAGGTGAGAGGGAGTTCTTTACAGAAATAGAATTGCTGTCAAGGTTACACCATCGCAACCTTGTGTCTCTCATTGGATACTGTGATGAAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCAAATGGAACCCTAAGGGATCATCTTTCTGCTCATTCAAAAGATGCTCTTAGTTTTTCTCTGAGGTTAAAGATTGGTCTGGGATCAGCAAAAGGTCTTCTATATCTGCACACAGAAGCTAATCCTCCGATATTCCACCGAGACGTGAAAGCCAGCAATATATTACTGGACACAAGGTACACAGCAAAAGTTGCTGATTTTGGTCTTTCACGGCTTGCTCCAGTTCCAGATATTGAAGGAAATGTACCTGCTCATGTATCCACAGTAGTAAAGGGCACCCCGGGTTATCTTGATCCAGAGTACTTCTTAACTCGTAATTTGACCGACAAAAGTGATGTTTATAGTTTGGGTGTTGTATTTCTGGAACTTTTGACTGCGAGGCCACCAATCTTTCACGGTGAAAATATTATTAGACAGGTTAATATGACATACCAATCAGGTGGAATATCTCGAGTAGTTGATAAACGTATCGAGTCTTATCCATCTGAGTATGCAGAGAGATTTTTGACTTTAGCCTTAAAGTGTTGCAAAGATTCACCAGATGAGAGACCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAATACATCTATTCTATGTTACCCGATTCAGATACCAAGGGAGTTGAATATGTTACAAGTGATTCTTCTGGCACAATATTCAGTTCACAACCTTCATCATCTATTATAAAGACTCCTTTTATTTCCGGAGATGTGTCAGGTAGTGACCTTGTCAGTGGAACCATACCAACCATCAAGCCAAGATAG 2913 0.4068 MRERKAKPCSVQERQSKGLVFSGFSGMYLSKGCRCEVVLCFWFFCYFLLAASQVTDPTEVEALRTIKRSLFDINGNLSNWDRGDPCTSNWIGVMCSNTTLADGNLHVLQLQLLNLNLSGTLAPEIGNLSYLEIVDFMWNDITGSIPKEIGNIKTLKLLLLSGNKLTNDLPDELGHLPALERMQIDENKITGPIPLSFANLNSTKHFHMNNNSLSGQIPAQLSQLGSLIHLLLDNNNLTGNLPSELSEMPSLTILQLDNNNFEGSSIPESYANMPKLLKLSLRNCNLTGSIPDFSRIPHLAYLDLSFNQLNESIPTNKLSDNMTTIDLSNNKLNGTIPSYFSGLPRLQKLSIANNAISGTVPSTIWQNRTLNATEQLILNMQNNQLTSISGTTNLPPNVTLMLQGNRVCLNNNSLVQLCGGESDNNMDGGSSVLCPSQGCPPPYEYTVECICAAPLIVHYRLKSPGFSDFREYVTEFESFLTNGLSVHTNQLFIERFTWEEGRLRMNLKLFPEYIDNTSSRQFSKNEVVRIRDMFREWDISDSDLFGPYELLDFVLLDIYSEAITPSSSSGISKGALAGIILGAIACAVTLSAIVSILILRVRMRDYHALSKRRNASRISIRVEGVRSFDYKEMALATNNFSQSAQIGEGGYGKVYKGRLPDGTVVAIKRAQEGSLQGEREFFTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSAHSKDALSFSLRLKIGLGSAKGLLYLHTEANPPIFHRDVKASNILLDTRYTAKVADFGLSRLAPVPDIEGNVPAHVSTVVKGTPGYLDPEYFLTRNLTDKSDVYSLGVVFLELLTARPPIFHGENIIRQVNMTYQSGGISRVVDKRIESYPSEYAERFLTLALKCCKDSPDERPKMAEVARELEYIYSMLPDSDTKGVEYVTSDSSGTIFSSQPSSSIIKTPFISGDVSGSDLVSGTIPTIKPR 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02023 970 FunFam Leucine-rich repeat protein kinase family protein 604 715 - -
Viun8g02023 970 FunFam Predicted protein 197 418 - -
Viun8g02023 970 Gene3D Transferase(Phosphotransferase) domain 1 716 927 - -
Viun8g02023 970 SMART serkin_6 640 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02023 970 SUPERFAMILY Protein kinase-like (PK-like) 625 931 IPR011009 -
Viun8g02023 970 Gene3D Phosphorylase Kinase; domain 1 610 715 - -
Viun8g02023 970 Pfam Leucine rich repeat N-terminal domain 57 96 IPR013210 -
Viun8g02023 970 Gene3D Ribonuclease Inhibitor 219 319 IPR032675 -
Viun8g02023 970 Gene3D Ribonuclease Inhibitor 56 218 IPR032675 -
Viun8g02023 970 CDD STKc_IRAK 646 910 - -
Viun8g02023 970 FunFam Leucine-rich repeat receptor-like kinase 58 173 - -
Viun8g02023 970 Gene3D Ribonuclease Inhibitor 320 408 IPR032675 -
Viun8g02023 970 PANTHER RECEPTOR-LIKE PROTEIN 55 66 914 - -
Viun8g02023 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Viun8g02023 970 Pfam Leucine rich repeat 321 368 IPR001611 GO:0005515
Viun8g02023 970 SUPERFAMILY L domain-like 71 409 - -
Viun8g02023 970 ProSiteProfiles Protein kinase domain profile. 640 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02023 970 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524
Viun8g02023 970 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 716 925 - -
Viun8g02023 970 Pfam Protein kinase domain 641 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02023 Viun-Chr8 30785704 30793082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02023 45 922 Receptor kinase-like Gene Family AT5G01950 56.502 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Viun8g02023 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02023 - - gmx:100801035 1467.21