Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02022 ATGTATCTTTCAAAGGGTTGTAGGTGTGAGGTTGTTCTCTGTTTCTGGTTTTTCTGCTATTTCTTATTGGCTGCTAGTCAGGTCACTGACCCTACAGAAGTTGAGGCATTAAGAACCATAAAGAGAAGTTTGTTTGATATTAATGGAAATTTGAGCAACTGGGATCGTGGAGATCCATGTACATCCAACTGGATAGGGGTTATGTGCTCCAATACAACATTAGCCGATGGCAATTTACATGTTCTACAATTGCAACTACTGAATTTGAACCTGTCTGGAACTTTGGCACCTGAGATCGGCAACTTGTCTTATTTGGAAATAGTGGACTTTATGTGGAATGACATTACTGGGAGTATACCGAAGGAGATTGGCAATATCAAAACTTTGAAACTCTTACTCCTGAGTGGAAATAAACTAACAAATGATCTGCCTGATGAGCTTGGCCATCTTCCAGCGCTGGAGAGAATGCAAATTGATGAGAACAAGATTACAGGACCCATACCACTATCATTTGCAAACCTGAACAGCACAAAACACTTCCACATGAACAACAATTCACTTAGTGGACAAATCCCAGCACAGCTTTCCCAATTAGGAAGCCTTATTCACCTTCTTCTTGACAACAATAACTTGACAGGAAATCTCCCATCCGAGCTCTCTGAGATGCCAAGCTTAACAATACTTCAACTCGATAACAATAACTTCGAAGGAAGTAGCATACCAGAATCTTATGCCAACATGCCAAAATTGTTGAAATTAAGCCTTAGGAACTGCAACTTGACAGGATCAATTCCTGATTTCAGCAGGATACCACACCTTGCTTACCTTGACCTCAGTTTCAATCAATTGAATGAATCAATTCCTACCAATAAGCTATCAGACAATATGACAACCATTGATTTATCAAACAACAAGCTCAATGGAACAATTCCATCCTACTTTTCTGGTCTTCCACGTCTTCAGAAATTGTCAATTGCCAACAATGCAATCAGTGGTACTGTTCCTTCTACCATTTGGCAGAACAGGACTTTAAATGCAACAGAGCAACTTATCTTGAACATGCAAAATAATCAACTTACAAGCATATCAGGCACTACAAATCTTCCTCCAAATGTCACACTTATGCTTCAGGGAAATCGTGTATGTTTGAATAACAACTCCCTAGTTCAGCTTTGTGGAGGTGAAAGTGACAATAACATGGATGGAGGCTCCAGTGTTCTGTGTCCAAGTCAAGGATGTCCCCCTCCTTATGAATACACTGTGGAGTGTATCTGTGCTGCCCCATTGATTGTTCATTATCGGTTGAAAAGTCCAGGTTTTTCAGATTTCCGTGAATATGTGACAGAATTTGAGAGCTTCCTGACAAATGGTCTTAGTGTGCATACTAATCAGCTGTTCATTGAGCGTTTTACGTGGGAAGAAGGGCGATTGAGAATGAACCTGAAGCTTTTCCCAGAATATATTGACAATACAAGTTCTCGTCAGTTCAGTAAAAATGAGGTTGTTCGGATTAGAGACATGTTCAGAGAATGGGATATTAGTGACAGTGACCTGTTTGGTCCTTATGAACTCTTGGACTTCGTTCTACTGGATATTTATAGCGAAGCGATTACTCCGTCTTCAAGTTCAGGGATAAGCAAAGGTGCACTGGCTGGAATAATCTTAGGTGCAATTGCCTGTGCAGTTACATTATCGGCAATTGTTTCCATTCTTATTTTGAGAGTACGCATGAGAGATTATCATGCACTTTCCAAAAGGCGTAACGCATCTAGGATCTCGATAAGAGTTGAAGGTGTAAGATCATTTGATTACAAAGAAATGGCCTTGGCCACAAACAATTTTAGCCAGTCTGCTCAGATAGGAGAAGGGGGCTATGGGAAGGTTTATAAAGGTCGTCTTCCTGATGGCACTGTTGTAGCCATAAAACGTGCACAGGAGGGTTCACTGCAAGGTGAGAGGGAGTTCTTTACAGAAATAGAATTGCTGTCAAGGTTACACCATCGCAACCTTGTGTCTCTCATTGGATACTGTGATGAAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCAAATGGAACCCTAAGGGATCATCTTTCTGCTCATTCAAAAGATGCTCTTAGTTTTTCTCTGAGGTTAAAGATTGGTCTGGGATCAGCAAAAGGTCTTCTATATCTGCACACAGAAGCTAATCCTCCGATATTCCACCGAGACGTGAAAGCCAGCAATATATTACTGGACACAAGGTACACAGCAAAAGTTGCTGATTTTGGTCTTTCACGGCTTGCTCCAGTTCCAGATATTGAAGGAAATGTACCTGCTCATGTATCCACAGTAGTAAAGGGCACCCCGGGTTATCTTGATCCAGAGTACTTCTTAACTCGTAATTTGACCGACAAAAGTGATGTTTATAGTTTGGGTGTTGTATTTCTGGAACTTTTGACTGCGAGGCCACCAATCTTTCACGGTGAAAATATTATTAGACAGGTTAATATGACATACCAATCAGGTGGAATATCTCGAGTAGTTGATAAACGTATCGAGTCTTATCCATCTGAGTATGCAGAGAGATTTTTGACTTTAGCCTTAAAGTGTTGCAAAGATTCACCAGATGAGAGACCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAATACATCTATTCTATGTTACCCGATTCAGATACCAAGGGAGTTGAATATGTTACAAGTGATTCTTCTGGCACAATATTCAGTTCACAACCTTCATCATCTATTATAAAGACTCCTTTTATTTCCGGAGATGTGTCAGGTAGTGACCTTGTCAGTGGAACCATACCAACCATCAAGCCAAGATAG 2835 0.406 MYLSKGCRCEVVLCFWFFCYFLLAASQVTDPTEVEALRTIKRSLFDINGNLSNWDRGDPCTSNWIGVMCSNTTLADGNLHVLQLQLLNLNLSGTLAPEIGNLSYLEIVDFMWNDITGSIPKEIGNIKTLKLLLLSGNKLTNDLPDELGHLPALERMQIDENKITGPIPLSFANLNSTKHFHMNNNSLSGQIPAQLSQLGSLIHLLLDNNNLTGNLPSELSEMPSLTILQLDNNNFEGSSIPESYANMPKLLKLSLRNCNLTGSIPDFSRIPHLAYLDLSFNQLNESIPTNKLSDNMTTIDLSNNKLNGTIPSYFSGLPRLQKLSIANNAISGTVPSTIWQNRTLNATEQLILNMQNNQLTSISGTTNLPPNVTLMLQGNRVCLNNNSLVQLCGGESDNNMDGGSSVLCPSQGCPPPYEYTVECICAAPLIVHYRLKSPGFSDFREYVTEFESFLTNGLSVHTNQLFIERFTWEEGRLRMNLKLFPEYIDNTSSRQFSKNEVVRIRDMFREWDISDSDLFGPYELLDFVLLDIYSEAITPSSSSGISKGALAGIILGAIACAVTLSAIVSILILRVRMRDYHALSKRRNASRISIRVEGVRSFDYKEMALATNNFSQSAQIGEGGYGKVYKGRLPDGTVVAIKRAQEGSLQGEREFFTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSAHSKDALSFSLRLKIGLGSAKGLLYLHTEANPPIFHRDVKASNILLDTRYTAKVADFGLSRLAPVPDIEGNVPAHVSTVVKGTPGYLDPEYFLTRNLTDKSDVYSLGVVFLELLTARPPIFHGENIIRQVNMTYQSGGISRVVDKRIESYPSEYAERFLTLALKCCKDSPDERPKMAEVARELEYIYSMLPDSDTKGVEYVTSDSSGTIFSSQPSSSIIKTPFISGDVSGSDLVSGTIPTIKPR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02022 944 Pfam Leucine rich repeat 295 342 IPR001611 GO:0005515
Viun8g02022 944 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Viun8g02022 944 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 690 899 - -
Viun8g02022 944 SUPERFAMILY L domain-like 45 383 - -
Viun8g02022 944 ProSiteProfiles Protein kinase domain profile. 614 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02022 944 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
Viun8g02022 944 Gene3D Phosphorylase Kinase; domain 1 584 689 - -
Viun8g02022 944 SUPERFAMILY Protein kinase-like (PK-like) 599 905 IPR011009 -
Viun8g02022 944 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Viun8g02022 944 SMART serkin_6 614 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02022 944 Gene3D Transferase(Phosphotransferase) domain 1 690 901 - -
Viun8g02022 944 Gene3D Ribonuclease Inhibitor 293 382 IPR032675 -
Viun8g02022 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672|GO:0006468
Viun8g02022 944 PANTHER RECEPTOR-LIKE PROTEIN 55 40 888 - -
Viun8g02022 944 CDD STKc_IRAK 620 884 - -
Viun8g02022 944 FunFam Leucine-rich repeat receptor-like kinase 32 147 - -
Viun8g02022 944 Pfam Protein kinase domain 615 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02022 944 FunFam Leucine-rich repeat protein kinase family protein 578 689 - -
Viun8g02022 944 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
Viun8g02022 944 FunFam Predicted protein 171 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02022 Viun-Chr8 30785611 30792886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02022 19 896 Receptor kinase-like Gene Family AT5G01950 56.502 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Viun8g02022 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02022 - - gmx:100801035 1467.21