Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02017 ATGGCAGATACTGCTTCAAATTCATGTATCAATATCTTATACCTTCTCACCAAAAAACTCACCATGAAGTTCTACTTCCCTCGAGTGCATCCTTTCCTTTTCATAGTTGTTATTCTATGTCCTATGGTTTTTGCTGACTTAAATTCTGATAAGCAAGCCCTTCTTGATTTTGCTGCTTCTGTCCCCCATCGCCGTGACCTTAAGTGGAATTCAGCTACTTCAATTTGTACATCCTGGGTAGGTGTCACTTGCAATCAAAATGGCACCCGTGTTGTTTCTCTCCGGCTTCCTGGAATTGGACTTGTCGGCACGATTCCGGCCAATACACTTGGCAAGATTGACTCACTCAGAAATATCAGCCTCCGTGCCAACCTACTCAGTGGAAGTCTTCCTCCTGATATTTCTTCTCTTCCTTCTCTACAATATCTTTACCTTCAGCATAATAACCTTTCTGGTAACATACCTACCTCATTGTCCACCCACCTCAATGTACTTGATTTGTCATACAATTCCTTCACCGGTGCTATTCCAAAGACATTGCAAAACTTAACACAACTAACTAGGTTGAACCTCCAGAACAACTCTCTATCTGGTGAGATACCAAATCTCAATGTCACTAAGCTCAGGCAATTGAATTTAAGCTACAACAATTTGAATGGCTCTATCCCTGCTGCTCTTCAGACTTTCCCCAATTCTTCCTTTGAGGGTAACTCTCTATGTGGATTACCTCTAAATCCATGCTCTTCAGCCCCCCCTGCACCTCCTCCATCATTAACTCCTGCCCCACCAACTCCTTCAAGACACAGCTCCAAAAGTAAATTGAGTAAGGCAGCTATCATTGCAATTGCAGTTGGTGGGGGTGTGCTATTACTTTTAGCAGCTCTCATCATTGTTCTTTGCTGTTTAAAGAAAAAGAATGATGGAAGCCCCAGAGCTACTAAAGGCAAAGGTCCTAGTGGTGGGAGAACTGAGAAACCAAAAGAAGAGTTTGGAAGTGGGGTGCAAGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAAGGCAGTTCTTATAATTTTGATCTAGAGGATTTGCTGAGAGCTTCTGCTGAAGTTCTTGGAAAGGGTAGTTATGGCACTGCATATAAGGCTATATTAGAAGAGTCAACAACAGTTGTAGTGAAAAGGTTGAAGGAAGTCGTGGTTGGGAAAAGGGAATTTGAACAGCAGATGGAGATTGTGAGAAGAGTTGGACAGCACCCAAATGTTGTGCCACTTCGTGCTTACTATTATTCCAAGGATGAGAAGCTTTTGGTTTATGACTACATCCCAAATGGCAATCTATCAACCCTCTTGCATGGTAACAGAGCAAGTGGAAGAACTCCATTAGATTGGAACTCCAGAATAAAAATCTCTGTTGGAATTGCCAGAGGAATTGCTCACATACATTCAGTTGGTGGTCCAAAATTCACTCACGGAAATGTGAAATCTTCAAATGTCCTCCTCAACCAAGATAACGATGGATGCATCTCAGACTTTGGCCTGACTCCACTCATGAATGTTCCTGCAACTCCTTCTAGAGCTGCAGGCTATCGTGCCCCTGAGGTGATTGAAACGCGTAAGCACTCTCACAAGTCAGATGTGTACAGTTTTGGTGTTCTCCTTCTGGAAATGCTGACCGGAAAAGCGCCACAACAGTCTCCGGGACGCGACGACGTGGTTGATCTCCCAAGGTGGGTGCAATCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTTGAACTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAGATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTTCCTGATATGAGGCCTACCATGGAGGAAGTAGTGAGAATGATTGAAGAGATCCGGCAATCCGACTCCGAAAACCGGCCATCTTCGGAAGAGAATAGATCCAAGGAGGAATCAACTGCTCAGACTCCATGA 1968 0.438 MADTASNSCINILYLLTKKLTMKFYFPRVHPFLFIVVILCPMVFADLNSDKQALLDFAASVPHRRDLKWNSATSICTSWVGVTCNQNGTRVVSLRLPGIGLVGTIPANTLGKIDSLRNISLRANLLSGSLPPDISSLPSLQYLYLQHNNLSGNIPTSLSTHLNVLDLSYNSFTGAIPKTLQNLTQLTRLNLQNNSLSGEIPNLNVTKLRQLNLSYNNLNGSIPAALQTFPNSSFEGNSLCGLPLNPCSSAPPAPPPSLTPAPPTPSRHSSKSKLSKAAIIAIAVGGGVLLLLAALIIVLCCLKKKNDGSPRATKGKGPSGGRTEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVRRVGQHPNVVPLRAYYYSKDEKLLVYDYIPNGNLSTLLHGNRASGRTPLDWNSRIKISVGIARGIAHIHSVGGPKFTHGNVKSSNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPQQSPGRDDVVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPTMEEVVRMIEEIRQSDSENRPSSEENRSKEESTAQTP 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02017 655 PANTHER OS05G0588300 PROTEIN 32 642 - -
Viun8g02017 655 MobiDBLite consensus disorder prediction 628 655 - -
Viun8g02017 655 Pfam Protein kinase domain 362 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02017 655 Gene3D Transferase(Phosphotransferase) domain 1 435 654 - -
Viun8g02017 655 CDD STKc_IRAK 365 630 - -
Viun8g02017 655 FunFam Leucine-rich repeat receptor-like protein kinase 49 159 - -
Viun8g02017 655 MobiDBLite consensus disorder prediction 249 270 - -
Viun8g02017 655 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 435 642 - -
Viun8g02017 655 SUPERFAMILY Protein kinase-like (PK-like) 363 638 IPR011009 -
Viun8g02017 655 ProSiteProfiles Protein kinase domain profile. 359 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02017 655 SUPERFAMILY L domain-like 60 231 - -
Viun8g02017 655 MobiDBLite consensus disorder prediction 628 649 - -
Viun8g02017 655 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
Viun8g02017 655 MobiDBLite consensus disorder prediction 249 263 - -
Viun8g02017 655 Gene3D Ribonuclease Inhibitor 161 248 IPR032675 -
Viun8g02017 655 Gene3D Phosphorylase Kinase; domain 1 327 434 - -
Viun8g02017 655 ProSitePatterns Protein kinases ATP-binding region signature. 365 396 IPR017441 GO:0005524
Viun8g02017 655 Gene3D Ribonuclease Inhibitor 48 160 IPR032675 -
Viun8g02017 655 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515
Viun8g02017 655 Pfam Leucine Rich Repeat 162 183 IPR001611 GO:0005515
Viun8g02017 655 FunFam pollen receptor-like kinase 1 327 434 - -
Viun8g02017 655 MobiDBLite consensus disorder prediction 307 334 - -
Viun8g02017 655 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Viun8g02017 655 MobiDBLite consensus disorder prediction 318 334 - -
Viun8g02017 655 FunFam Leucine-rich repeat receptor-like protein kinase 160 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02017 Viun-Chr8 30738812 30742545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02017 32 653 Receptor kinase-like Gene Family AT5G58300 70.317 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun8g02017 Pkinase 5.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02017 - - gmx:100776232 1043.88