Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02015 ATGTCCGTACACTCAACGCTCAATCCCCACCCCATCAACCCCGCCACCCCAAATTCCAATTTTGATGATAACCCACCCTGCAAAACCAAGAACAAAACCCAAAGGAGGCTCCTTCGGATCATAGTCACCGACCACGACGCCACTGATTCTGACTCCGACGACGAACAACGACAAAACAACCCAACAACGAGGAAACTCAAGAGGGAAATTACCCAAATCAGCATGCACCTTCCTCTCCCGGACAACTCCCTTTCTTCTTCTTCCTATTCTTCTGGTTTAGCTTCTGCTTCCACCTGTTCCTCCGAACAAGTCTCAAAGTGCAGAAGACCCAAAAAACCCCCACCACCCTCCGAAGCGGCCCGCCGCCGCAGCAAGTTCCGCGGCGTCCGTCAGCGGCCGTGGGGGCGATGGGCCGCGGAGATCCGCGACCCGACCCGTCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCACAGAGTACGACAAAGCCGCCGTCAAACTCAAGGGCCCCAACGCCGTCACCAATTTTCCCCTCACAACGCCGCCTCCAGCGGCGGAGTCTCCTTTCGCCACCATCGACAGCCTCAGCACCGACGGCGGCGCGTCGTACTCCGACTTGGTGGCCTCGCCGACGTCCGTTTTGACCTACGACTGCGACTCGACGCCGTTCGACAGTTTCCATTACGGCGACGTGGACGCGCTCGGGTTCCACATCGACGCGCCGTTAAGTCTGGCGGACGTTGACGTCGCGCTTACGTGTCATCCCGGAAAGGAGGAGGAAGAGGCGTTCGATGAATTCGATCTCGACGAGTTCATGAAGTGGCCTTACTAA 846 0.5839 MSVHSTLNPHPINPATPNSNFDDNPPCKTKNKTQRRLLRIIVTDHDATDSDSDDEQRQNNPTTRKLKREITQISMHLPLPDNSLSSSSYSSGLASASTCSSEQVSKCRRPKKPPPPSEAARRRSKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLTTPPPAAESPFATIDSLSTDGGASYSDLVASPTSVLTYDCDSTPFDSFHYGDVDALGFHIDAPLSLADVDVALTCHPGKEEEEAFDEFDLDEFMKWPY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02015 281 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Viun8g02015 281 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Viun8g02015 281 MobiDBLite consensus disorder prediction 1 27 - -
Viun8g02015 281 MobiDBLite consensus disorder prediction 105 124 - -
Viun8g02015 281 MobiDBLite consensus disorder prediction 78 104 - -
Viun8g02015 281 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
Viun8g02015 281 MobiDBLite consensus disorder prediction 78 129 - -
Viun8g02015 281 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Viun8g02015 281 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Viun8g02015 281 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Viun8g02015 281 MobiDBLite consensus disorder prediction 1 65 - -
Viun8g02015 281 PIRSF PTI6 10 281 IPR017392 GO:0003700
Viun8g02015 281 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Viun8g02015 281 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Viun8g02015 281 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Viun8g02015 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 192 - -
Viun8g02015 281 MobiDBLite consensus disorder prediction 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02015 Viun-Chr8 30724965 30727136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02015 28 231 AP2-EREBP Transcription Factor Family AT4G27950 42.857 3.67e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun8g02015 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02015 K13434 - gmx:100817278 382.489