Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02009 ATGGAGCTCGATGTTTGCATGAATGGTGCTTGCAAGAATGGGTATGCGAGAGAGTGGAAGAAAGGGTGGCCTCTGCGATCGGGTGGATTCGCTAGGCTCTGCGATAAGTGCGGATCTGCGTATGCCAATTCAATTTTCTGTGAAAAATTCCACCTGCATCAAACTGGTTGGAGAGAGTGCAACTTTTGCAACAAGTCTATCCACTGTGGATGCATAATATCAAGGTTTTCTTTTGAATACCTTGATTTTGGAGGTATAGGTTGCTCAACCTGTTTGAGGGCTTCTCAAATTCCTCTGATACAGGAGACTGGAAGGTCTATTAGATCAGCAAAAAATCATGCAAGTGATCGTCATACTGAACATATTGATGACAGACTATTCCTTGATGGTTCTAGCAAAAGAAAATTTATGCAGATGCGCAGAATTGTTGATGGTAGAGAATCCAGCCGTTGGCCTCAAGCTAAGAGAGATGACATAGATTCATGTATTGATCTAAACAGAGAAGAAATGAGATTTTCAAATATGATGAAACCGTCTAATTATTCATTGAAGTTTAGTGCATTAGAAAATAACAGACCAACATGGGAGAGTAGAAGTATGCAGAGATCAAGTTCATTGAATATGTCTCTGGGAGCCTCATCAGGAAACTCTGTGGTACCTTCTGCTTCAGAGATTGCAGAAAGGAGATTTGATGGTAAAACATCATCTTCTTCCTTTCATCAAGGGAAAAGACCTCTTTCCATTATGCCTAAACCATTGATGAATGCAATATCCATAATGGAATCAAGCAATGGAATGATTTCTCAAGAGCGTGTTGCACGGCCACCTACTGATGGGAAAGGCAAGAATATGTTACTTTCTCGATACTGGCCTAGAATTACAGACCAAGAGCTTCAGCAATTATCTGGAGACTTGAAATCTACTATAGTGCCTTTATTTGAGAAGGTACTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTGCCAAAATCTTGCGCTGAGGCTTACTTTCCTCCTATTTCACAATCAGATGGTGTTCCTTTGCATATGAAAGATGTGAAGGGAAATGAGTGGACATTTCAGTTTAGATTTTGGCCTAATAACAACAGTAGAATGTATGTATTAGAGGGAGTAACCCCTTGCATACAGGCCTTGCAACTAAATGCTGGCGACATTGTGATATTTAGTCGGATAGATCCTGGAGGCAAATTTGTTTTGGGTTTTAGAAGGGCATCAGATTCTACAGATACACAGGATGCTTCTGCTGGTAATTCCAATGTTTTTCCAACAAAGGAAAAAACCTTTTCTGGTACAACTGCAGGAAATAGTTATCATGATCCTCTCCAGACAAGGAAAGCGAATGGTGATGCTTACTTAAATAAATGTTCAGAGCATTTCCGTTTGGGTACTGGAATTGCTGAGTGTCTTCGAACTGAAAATTCTGAGATGGTAAACAACGATTTGGTACAACTACCAATTTCAGTTTCAGAAAAGACTCAAAATATTGGACCTATGTGCAAGAGGTTGCTCATACATAATGAAGATGCCATGGAGTTGAGAGTTACATGGGAAGAAGCTCAGGACTTGCTTTGTCCAGCGCCTAGTGTCAAAGCCAGTATCGTAGCAATTGAGGACCAAGAATTTGAGGAATATGAGGAACCCCCGGTCTTTGGAAGAGAACTACAATCAATGCTCGTTCATCAGGTTCTTTGA 1719 0.4078 MELDVCMNGACKNGYAREWKKGWPLRSGGFARLCDKCGSAYANSIFCEKFHLHQTGWRECNFCNKSIHCGCIISRFSFEYLDFGGIGCSTCLRASQIPLIQETGRSIRSAKNHASDRHTEHIDDRLFLDGSSKRKFMQMRRIVDGRESSRWPQAKRDDIDSCIDLNREEMRFSNMMKPSNYSLKFSALENNRPTWESRSMQRSSSLNMSLGASSGNSVVPSASEIAERRFDGKTSSSSFHQGKRPLSIMPKPLMNAISIMESSNGMISQERVARPPTDGKGKNMLLSRYWPRITDQELQQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSDGVPLHMKDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQALQLNAGDIVIFSRIDPGGKFVLGFRRASDSTDTQDASAGNSNVFPTKEKTFSGTTAGNSYHDPLQTRKANGDAYLNKCSEHFRLGTGIAECLRTENSEMVNNDLVQLPISVSEKTQNIGPMCKRLLIHNEDAMELRVTWEEAQDLLCPAPSVKASIVAIEDQEFEEYEEPPVFGRELQSMLVHQVL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02009 572 SUPERFAMILY DNA-binding pseudobarrel domain 310 412 IPR015300 -
Viun8g02009 572 Pfam B3 DNA binding domain 313 413 IPR003340 GO:0003677
Viun8g02009 572 Gene3D - 291 418 IPR015300 -
Viun8g02009 572 ProSiteProfiles B3 DNA-binding domain profile. 313 414 IPR003340 GO:0003677
Viun8g02009 572 FunFam B3 domain-containing transcription repressor VAL1 291 418 - -
Viun8g02009 572 CDD B3_DNA 311 412 IPR003340 GO:0003677
Viun8g02009 572 SMART B3_2 313 414 IPR003340 GO:0003677
Viun8g02009 572 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02009 Viun-Chr8 30633147 30639299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02009 3 561 B3 DNA Binding Superfamily AT4G32010 44.523 2.01e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun8g02009 B3 3.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02009 K09287 - vun:114195467 1154.04