Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02004 ATGGCACATGCATATTCAACTGCATTGCTTCTTCTGATTTCTGTGTTTGCTGGAACGCAGTTGCAGGGTGGTGCCACTGCTACCGATGGTGCTTGGGAGGGTGGCCATGCTACTTTCTATACTGGTTCTTCTAAAACCATGGGAGGTGCATGTGGTTACGGGGATGTGATCGCAGAGGGATACGGAAGTGACACTACAGCTCTAAGCACTGCTTTGTTCAACAATGGGTTGTCTTGCGGAGCATGTTTTGCAGTTAGGTGTGTTAATGACGCAAAATGGTGCAAACCTGCGACTGTTGTTGTCACTGCTACGAACCTCTGTCCTCCAGGTACTTGGTGCACCCCTCCTTCACTGCACCTCAACTTGGCACAATCACCCTTCCTCAAAATTGCTCAGTACACTGCTGGAATTGTGCCTGTGCAATTTAGAAGGGTGTCTTGTGTGAAAAAGGGAGGAATAAGGTTCACAATTAATGGACACTCTTACTTCAACCTGGTTTTGATCCACAACGTCGCGGGTGCAGGGGATGTCAATGCAGTCTCCATCAAAGGGTCCAAAACTGGTTGGCAACCCATGTCAAGGAACTGGGGGCAAAATTGGCAGAGCAACTCCTTCCTCAATGGACAGAGTCTCTCTTTTCAAGTCACTACCAGTGACCGTAGAACTGTCACAAGCTACAACGTGGCACCGGCTAATTGGCAGTTTGGTCAGACCTTCGAGGGACGTCAGTTTTAG 735 0.4884 MAHAYSTALLLLISVFAGTQLQGGATATDGAWEGGHATFYTGSSKTMGGACGYGDVIAEGYGSDTTALSTALFNNGLSCGACFAVRCVNDAKWCKPATVVVTATNLCPPGTWCTPPSLHLNLAQSPFLKIAQYTAGIVPVQFRRVSCVKKGGIRFTINGHSYFNLVLIHNVAGAGDVNAVSIKGSKTGWQPMSRNWGQNWQSNSFLNGQSLSFQVTTSDRRTVTSYNVAPANWQFGQTFEGRQF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02004 244 Pfam Lytic transglycolase 65 142 IPR009009 -
Viun8g02004 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Viun8g02004 244 FunFam Expansin 152 244 - -
Viun8g02004 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Viun8g02004 244 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Viun8g02004 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Viun8g02004 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Viun8g02004 244 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Viun8g02004 244 CDD DPBB_EXPA_N 32 147 - -
Viun8g02004 244 Gene3D - 19 147 IPR036908 -
Viun8g02004 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Viun8g02004 244 SUPERFAMILY Barwin-like endoglucanases 31 170 IPR036908 -
Viun8g02004 244 SMART dpbb_1 65 142 IPR007112 -
Viun8g02004 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Viun8g02004 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Viun8g02004 244 Gene3D - 151 244 IPR036749 -
Viun8g02004 244 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Viun8g02004 244 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Viun8g02004 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Viun8g02004 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Viun8g02004 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Viun8g02004 244 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Viun8g02004 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Viun8g02004 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Viun8g02004 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Viun8g02004 244 PANTHER EXPANSIN-A15 10 244 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02004 Viun-Chr8 30590747 30592413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02004 12 244 Expansin Gene Family AT2G40610 66.393 6.87e-115 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02004 - K20628 gmx:100777044 375.555