Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01990 ATGGGAAGAAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTTTCTCCTTATTTCTCACCACACGAGCCTCAAAAGTTTGTAGCAGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTACCAGAGGCTCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACTTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATATCAACCTTGCAGCAACAAGTTCAATCTTTACAAGCAGAACTAAATGCAATAAGAGCAGAGATACTAAAATACAAATATAGAGAAGCCGCGAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACTAGGTCTTTCTCAACCTCTCACTCCTCCTCCACCAAAACCATTGCATACTCCTCCACTAAAACCATTGCCTTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 663 0.4284 MGRKHFYGPTPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEAQRADAANSLVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELNAIRAEILKYKYREAASLISSNHAALVSSADAISAAIPTNSQPLGLSQPLTPPPPKPLHTPPLKPLPSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01990 220 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Viun8g01990 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 170 - -
Viun8g01990 220 MobiDBLite consensus disorder prediction 156 177 - -
Viun8g01990 220 MobiDBLite consensus disorder prediction 160 177 - -
Viun8g01990 220 Pfam Lateral organ boundaries (LOB) domain 20 116 IPR004883 -
Viun8g01990 220 Coils Coil 99 126 - -
Viun8g01990 220 MobiDBLite consensus disorder prediction 189 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01990 Viun-Chr8 30436292 30437733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01990 1 133 AS2 family AT2G30340 78.358 1.13e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun8g01990 LOB 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01990 - - ccaj:109795340 323.553