Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01989 ATGTTTGGACATCAAGAGATAGACAGATTAGAGGAGATAACAAAGGTGAGAGCAGAGGTGGAAGCATCATCTCAAATGGGAAGAAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTTTCTCCTTATTTCTCACCACACGAGCCTCAAAAGTTTGTAGCAGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTACCAGAGGCTCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACTTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATATCAACCTTGCAGCAACAAGTTCAATCTTTACAAGCAGAACTAAATGCAATAAGAGCAGAGATACTAAAATACAAATATAGAGAAGCCGCGAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACTAGGTCTTTCTCAACCTCTCACTCCTCCTCCACCAAAACCATTGCATACTCCTCCACTAAAACCATTGCCTTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 738 0.4268 MFGHQEIDRLEEITKVRAEVEASSQMGRKHFYGPTPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEAQRADAANSLVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELNAIRAEILKYKYREAASLISSNHAALVSSADAISAAIPTNSQPLGLSQPLTPPPPKPLHTPPLKPLPSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01989 245 MobiDBLite consensus disorder prediction 214 245 - -
Viun8g01989 245 MobiDBLite consensus disorder prediction 185 202 - -
Viun8g01989 245 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Viun8g01989 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 195 - -
Viun8g01989 245 Pfam Lateral organ boundaries (LOB) domain 45 141 IPR004883 -
Viun8g01989 245 Coils Coil 124 151 - -
Viun8g01989 245 MobiDBLite consensus disorder prediction 181 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01989 Viun-Chr8 30436292 30437784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01989 26 158 AS2 family AT2G30340 78.358 3.72e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun8g01989 LOB 2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01989 - - ccaj:109795340 363.229