Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01985 ATGGAGATATCTTTATTGAAAGTCCTATCTGATGCAATATCCACATTTTTGCATTTATCATTTTCTGAAAAGATGAAGTTAGAACCTGTATCAAAATGTTTCCAAAAGGCAGAGAAGATGCTTAAGCTGTTGAAGCCAATTGTTGAGACTACTGTTTTTTCAGATATAGCTTCTAATGAAGGGCTTAGGAAACTATTTGAGGAACTTGGTCTGGCAGTTGATGAGTTGAGGGAGCTTATTCTGAACTGGCATCCATTATCTAGCAAATTTTACTTTGTTAATCAAGTTGATCCCATAATATCAACAATTCAGGCTTTGGGTCTCGGCATTTTACAACAGCTGGAGGATTCACCGCAAGTTCTCCCAGATAATTTGGGAAATGAAACATCATCAGCCATTAAAAAAGCTATTATGGAACAACCGGAAGGTGTAGGACCAAGTTTGGAGGTCCTGGAAAACATTGCTGACAACCTGGGTCTACGGTCTAATCAAGAGGTCCTGATTGAGGCTGTAGCCCTTGAAAGGCTGAAGGAGAAGGCTGAACAAATTGAAAACACTTCAGAAGTTGAATATATTGATAAAATGATCTTAGTTGTAAATCGAATGCATGAGCATGTTGTTATGCTTAAGCAAGCCCAGAGTTCTATCCCAGTGTCAGTACCTTCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCGGTCATTGTGGCATCTGGACAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGACCTAGGTCTTACTGTTTGTCCAAAGACACGCCAGACTCTTGTCCACACCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGCTAACTGGTGTGAAACACATGATGTAAAGCTTCCTGATCCCATTAATTCCAAAAGCTTAAATCAACCATCACCCTTTCTTGTGTCTATGGAGTCTGGTTTGACCAAGGATTTTCCTGTTAGAACTAGTGGTGAACCCCACCAAGAACGAATCTCAACATTGCATCCCTCTTCTATACCGGTTGGTTCTTTAAATGGCACGGTTCATGAGCCGTATGTGGATCTTGAAAGAATATCACACACCGGTTCGGATGATGAATCTGCAAGCTCGAATGAAGGGAGCATCGATTCAGTTGGTGAATCATTAACATCACCATCCAGAAATATCTTGAGCTCAGAACAATCTCACACTGATGTTAGAACTACTTCTGATGTCAACAATACTCTGCTATCAACCAGCTCAGTCCACAATCGCGATGCTTCTGGGGAATTGAATTCAGTGCAAGATGCTGTTCCCTTGCCAACTCGGCATAGAGAATCTGAGTTTTCTGCCCAATTACCAGTACCAAGGTCTCGAAGCCATACTATATGGCAACGGTCATCCGAGTGGCGTGTTCCTAGGGTAGTGTCTACTGTTGAAACAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTCTGAAATTAGTGGAGCAGTTAAAGATTGATTCTCTTGATGCTAAGAGAGAGGCAACATCAGAACTTCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCAAACTGTGGAGCCATTAGCTTACTAGTTGATTTACTGCAATCACCTGATTCTATGATCCAGGAAAATTCTGTTACAGCTCTCCTTAACTTATCAATCAATGATAACAACAAGGCTGCTATTGCAAATGCCGGTGCAATTGAACCTTTGATTCATGTCCTCAAGACAGGGAGTGCAGAAGCCAAGGAAAATTCAGCTGCCACTCTTTTCAGCCTCTCAGTAACTGAGGAAAACAAAATCAGGATAGGGAGGTCTGGGGCAATTGGGCCACTGGTTGATTTGTTGGGAAACGGAACCCCTAGGGGGAAGAAAGATGCTGCCACTGCGTTGTTTAATTTGTCCATATTTCATGAAAACAAGGACCGGATTGTGCAAGCAGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCTGCAGCTGGAATGGTGGACAAGGCTGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAGCAGCCATTGGTGATCAGGGTGGGATTCCTGTTCTGGTTGAGGTTATTGAGTTGGGTTCTGTGAGAGGAAAGGAGAATGCTGCTGCGGCTCTTCTACATCTTTGCTCAGACAACCACAGATATTTAAACAGGGTGCTCCAAGAAGGAGCTGTGCCACCTTTGGTAGCATTGTCACAATCTGGCACCCCAAGGGCCAAAGAAAAGGCCCTTGCGCTCCTTAATCAATTTAGAAGCCAAAGACATGGTGGTGGTGGGAGAGGTTGA 2316 0.4288 MEISLLKVLSDAISTFLHLSFSEKMKLEPVSKCFQKAEKMLKLLKPIVETTVFSDIASNEGLRKLFEELGLAVDELRELILNWHPLSSKFYFVNQVDPIISTIQALGLGILQQLEDSPQVLPDNLGNETSSAIKKAIMEQPEGVGPSLEVLENIADNLGLRSNQEVLIEAVALERLKEKAEQIENTSEVEYIDKMILVVNRMHEHVVMLKQAQSSIPVSVPSDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETHDVKLPDPINSKSLNQPSPFLVSMESGLTKDFPVRTSGEPHQERISTLHPSSIPVGSLNGTVHEPYVDLERISHTGSDDESASSNEGSIDSVGESLTSPSRNILSSEQSHTDVRTTSDVNNTLLSTSSVHNRDASGELNSVQDAVPLPTRHRESEFSAQLPVPRSRSHTIWQRSSEWRVPRVVSTVETRADLSAAETQVLKLVEQLKIDSLDAKREATSELRLLAKHNMDNRIVISNCGAISLLVDLLQSPDSMIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSAEAKENSAATLFSLSVTEENKIRIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKAAIGDQGGIPVLVEVIELGSVRGKENAAAALLHLCSDNHRYLNRVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGGGGRG 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01985 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 295 IPR013083 -
Viun8g01985 771 SUPERFAMILY RING/U-box 208 297 - -
Viun8g01985 771 FunFam RING-type E3 ubiquitin transferase 219 294 - -
Viun8g01985 771 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Viun8g01985 771 SMART arm_5 558 598 IPR000225 GO:0005515
Viun8g01985 771 SMART arm_5 640 679 IPR000225 GO:0005515
Viun8g01985 771 SMART arm_5 680 720 IPR000225 GO:0005515
Viun8g01985 771 SMART arm_5 517 557 IPR000225 GO:0005515
Viun8g01985 771 SMART arm_5 721 762 IPR000225 GO:0005515
Viun8g01985 771 SMART arm_5 599 639 IPR000225 GO:0005515
Viun8g01985 771 MobiDBLite consensus disorder prediction 320 349 - -
Viun8g01985 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 569 611 IPR000225 GO:0005515
Viun8g01985 771 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Viun8g01985 771 Coils Coil 163 183 - -
Viun8g01985 771 MobiDBLite consensus disorder prediction 367 407 - -
Viun8g01985 771 Pfam Armadillo/beta-catenin-like repeat 642 678 IPR000225 GO:0005515
Viun8g01985 771 Pfam Armadillo/beta-catenin-like repeat 600 638 IPR000225 GO:0005515
Viun8g01985 771 Pfam Armadillo/beta-catenin-like repeat 681 720 IPR000225 GO:0005515
Viun8g01985 771 Pfam Armadillo/beta-catenin-like repeat 519 556 IPR000225 GO:0005515
Viun8g01985 771 Pfam Armadillo/beta-catenin-like repeat 558 597 IPR000225 GO:0005515
Viun8g01985 771 SUPERFAMILY ARM repeat 488 760 IPR016024 -
Viun8g01985 771 CDD RING-Ubox_PUB 221 273 IPR045210 -
Viun8g01985 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 528 570 IPR000225 GO:0005515
Viun8g01985 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 610 652 IPR000225 GO:0005515
Viun8g01985 771 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Viun8g01985 771 Gene3D - 665 765 IPR011989 -
Viun8g01985 771 MobiDBLite consensus disorder prediction 363 407 - -
Viun8g01985 771 FunFam RING-type E3 ubiquitin transferase 472 766 - -
Viun8g01985 771 Gene3D - 559 664 IPR011989 -
Viun8g01985 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 651 692 IPR000225 GO:0005515
Viun8g01985 771 Gene3D - 466 558 IPR011989 -
Viun8g01985 771 PANTHER U BOX DOMAIN-CONTAINING 29 759 - -
Viun8g01985 771 MobiDBLite consensus disorder prediction 329 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01985 Viun-Chr8 30393087 30398421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01985 180 771 U-box Gene Family AT2G23140 60.031 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01985 - - gmx:100777715 1209.13