Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01960 ATGTTATCAGGGGACATACCTCCAAACCAGACCATTTACATCAAGAATCTCAATGAGAAGGTCAAGAAAGACGAGTTGAAGAGATCACTGTATTGCTTGTTCTCTCAATATGGAAGGATTTTGGATGTTGTTGCTCTAAAGACTCCCAGGCTTCGAGGACAGGCATGGGTTTGTTTCAGTGAAGTCACTGCAGCCAGCAATGCTGTGAGACAAATGCAAAACTTTCCATTTTATGAAAAACCTATGAGAATTCAATATGCAAAAACTAAGTCTGATTGTATTGCAAAAGAAGAGGGTAGTTATGTTCCAAGGGAAAAGAAGAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAGGAAGCACAACAATCTGGTGCGGCTAATGGCACACATAGTGCTAGTAATGGTGGTCCAACTGCATCATTCCGTCAAGGACCCAGTGCCCAAGAAGCAGCTGCTCCTAATAATATTTTATTCATAGAGAATTTGCCTCATGAAACTACTGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATTGAAGCCAAGCCAGGAATTGCATTTGTTGATTTTGAAGATGAGGTGCAATCATCCATGGCCATGCAGGCTCTTAACGGCTTCAAAATCACTCCACTGAATCCCATGAATATAACCTTTGCTAAGAAGTAG 699 0.4192 MLSGDIPPNQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPRLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSGAANGTHSASNGGPTASFRQGPSAQEAAAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALNGFKITPLNPMNITFAKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01960 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Viun8g01960 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Viun8g01960 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Viun8g01960 232 CDD RRM1_U1A_like 11 88 - -
Viun8g01960 232 SUPERFAMILY RNA-binding domain, RBD 8 219 IPR035979 GO:0003676
Viun8g01960 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 89 - -
Viun8g01960 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Viun8g01960 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Viun8g01960 232 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Viun8g01960 232 Coils Coil 104 126 - -
Viun8g01960 232 Gene3D - 148 232 IPR012677 -
Viun8g01960 232 CDD RRM2_U1A_like 156 228 - -
Viun8g01960 232 MobiDBLite consensus disorder prediction 125 150 - -
Viun8g01960 232 MobiDBLite consensus disorder prediction 98 150 - -
Viun8g01960 232 MobiDBLite consensus disorder prediction 98 123 - -
Viun8g01960 232 FunFam U2 small nuclear ribonucleoprotein B'' 149 232 - -
Viun8g01960 232 Gene3D - 4 117 IPR012677 -
Viun8g01960 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01960 Viun-Chr8 30121590 30124991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01960 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 22.881 1.15e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01960 K11094 - gmx:100805822 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01960 8 30121590 30124991 Viun8g01960 8 30121590 30124991 ECH