Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01933 ATGGTTTTTGAGATGGGGATATATCTCAGCGCTCCCAAAACAGAGAAGGCATCTGAAGATGGCGAGAACGACAAGCTGCGGTTCGGTTTGTCTTCCATGCAGGGTTGGCGGGCTTCCATGGAAGATGCTCATGCAGCTATCCCATATTTGGACGAGTCTACATCTTACTTTGGCGTTTATGATGGCCATGGAGGCAAAGCAGTTTCTAAATTCTGTGCCAAGTATCTACACCAGCAGGTGCTGAAGAGTGAATCTTACCAAGCTGGAGATATAAGCACATCTTTACAAAAATCTTTTCTTAGAATGGATGAGATGATGCGTGGACAAAGAGGGTGGAGAGAATTAGCAGTCTTGGGGGATAAAATAGAAAAGTTATCTGGTATGTTAGAGGGCTTTATTTGGTCTCCCAGGAGCAGTGAAGCCAATGAGAGTATCGATGATTGGGCATTTGAGGAGGGACCCCATTCTGATTTTACTGGACCAAACTCTGGAAGCACAGCTTGTGTAGCTGTTATCCGAGGAAAGAAACTTGTTGTTGGTAATGCTGGAGATTCTAGATGCGTCTTGTCAAGGAAAGGCCAGGCACACAATTTATCTAAGGATCACAAGCCTGATCTTGAGGCTGAGAAAGACAGGATTCTAAAAGCTGGTGGTTTCATTCAAGTTGGACGGGTCAATGGAAGTTTAAACTTGGCTAGAGCAATTGGAGATATGGAGTTCAAGCAGAACAAGTATTTGCCTGCCGAAAAGCAGATCGTGACTGCTGATCCGGACGTAACTTCAGTTGAACTTTGTGATGATGATGAATTCCTTGTGTTAGCCTGTGATGGAATATGGGATTGCATGTCTAGCCAACAGCTTGTGGACTTCATACATCAACAGTTAAAGACGGAGAATAAACTTTCTGCGGTTTGTGAGAAAGTGTTTGATAGGTGCTTGGCACCAACAGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAAACCTTCCAGCGCTGATGTTTCTGCCACGAACCAGCCCCAATCGTCTGCTCAACCACCTGAAACCGATAAAAGTTCAGAGAAAAAAGTAGAGAAAAAGGTAGAATCGAAGTGA 1113 0.442 MVFEMGIYLSAPKTEKASEDGENDKLRFGLSSMQGWRASMEDAHAAIPYLDESTSYFGVYDGHGGKAVSKFCAKYLHQQVLKSESYQAGDISTSLQKSFLRMDEMMRGQRGWRELAVLGDKIEKLSGMLEGFIWSPRSSEANESIDDWAFEEGPHSDFTGPNSGSTACVAVIRGKKLVVGNAGDSRCVLSRKGQAHNLSKDHKPDLEAEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQNKYLPAEKQIVTADPDVTSVELCDDDEFLVLACDGIWDCMSSQQLVDFIHQQLKTENKLSAVCEKVFDRCLAPTAGGEGCDNMTMILIQFKKPSSADVSATNQPQSSAQPPETDKSSEKKVEKKVESK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01933 370 Gene3D - 4 333 IPR036457 -
Viun8g01933 370 CDD PP2Cc 27 332 IPR001932 -
Viun8g01933 370 ProSitePatterns PPM-type phosphatase domain signature. 56 64 IPR000222 GO:0043169
Viun8g01933 370 PANTHER PROTEIN PHOSPHATASE 2C 20 331 IPR015655 GO:0004722|GO:0006470
Viun8g01933 370 Pfam Protein phosphatase 2C 27 108 IPR001932 -
Viun8g01933 370 Pfam Protein phosphatase 2C 144 317 IPR001932 -
Viun8g01933 370 MobiDBLite consensus disorder prediction 355 370 - -
Viun8g01933 370 SUPERFAMILY PP2C-like 7 334 IPR036457 -
Viun8g01933 370 SMART PP2C_4 17 330 IPR001932 -
Viun8g01933 370 ProSiteProfiles PPM-type phosphatase domain profile. 27 332 IPR001932 -
Viun8g01933 370 MobiDBLite consensus disorder prediction 338 354 - -
Viun8g01933 370 MobiDBLite consensus disorder prediction 338 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01933 Viun-Chr8 29885664 29893767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01933 5 340 PP2C-type Phosphatase Gene Family AT2G25070 76.261 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01933 K17499 - gmx:100776787 669.848