Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01922 ATGGCCAGAAAATCGCAGAAAACCCTCAAGAACACTGACACCAACAACACTGTCAAACGCACACGAAAAACCGTTCCAAGAGATTCACCACCACAACGAAGTTCAATCTATAGGGGTGTCACAAGACATCGTTGGACTGGTCGGTATGAGGCTCATCTCTGGGACAAAAACTGTTGGAATGAATCGCAGAGCAAGAAAGGAAGACAAGTATATCTAGGGGCATATGATGATGAAGAAGCTGCAGCACGTGCTTATGATTTGGCAGCATTGAAGTACTGGGGTCAAGATACCATTCTCAATTTCCCATTAACAAATTATGAGGAGAAGCTCAAGGAAATGGAGGGTCAATCAAAAGAAGAATACATTGGATCCTTGAGAAGAAAAAGCAGTGGATTCTCTCGAGGAGTTTCGAAATACAGAGGTGTAGCAAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTTGGCAACAAATACCTATATCTTGGAACTTATGCTACACAAGAAGAGGCAGCAGCAGCATATGACATGGCAGCCATAGAATACAGAGGAGCTAATGCTGTTACGAACTTTGACGTGAGTCGTTATATCAACTGGCCAGGTCCTAAAACCGAAGAAGAGCATCAAAATGTTCCTATAAATGAAAATGTAAATTCTAATGCTGATGATATTGAACTAGGGTTTGTTTCACATGAACTTGGTTCAATCACTGACGAGAACACAACAGAGCATGTAGCACAATCTTCAGAGTCAAATCCTTCTCGTCGCACATTTCCTGAAGACATTCAAACAATATTTGAGAATCAAGGGCCAGACATCTACACTGAAAATGATGATATCATTTTTGGTGATTTAGGTTCATTTGGGGAACCAATTTTTCATTACGAGCTTGATGTTTAG 912 0.4134 MARKSQKTLKNTDTNNTVKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGANAVTNFDVSRYINWPGPKTEEEHQNVPINENVNSNADDIELGFVSHELGSITDENTTEHVAQSSESNPSRRTFPEDIQTIFENQGPDIYTENDDIIFGDLGSFGEPIFHYELDV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01922 303 SUPERFAMILY DNA-binding domain 35 103 IPR016177 GO:0003677
Viun8g01922 303 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 215 - -
Viun8g01922 303 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Viun8g01922 303 PRINTS Ethylene responsive element binding protein signature 178 198 IPR001471 GO:0003700|GO:0006355
Viun8g01922 303 ProSiteProfiles AP2/ERF domain profile. 36 102 IPR001471 GO:0003700|GO:0006355
Viun8g01922 303 FunFam AP2-like ethylene-responsive transcription factor 35 104 - -
Viun8g01922 303 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700|GO:0006355
Viun8g01922 303 CDD AP2 137 198 IPR001471 GO:0003700|GO:0006355
Viun8g01922 303 Pfam AP2 domain 137 188 IPR001471 GO:0003700|GO:0006355
Viun8g01922 303 Pfam AP2 domain 36 94 IPR001471 GO:0003700|GO:0006355
Viun8g01922 303 FunFam AP2-like ethylene-responsive transcription factor 137 198 - -
Viun8g01922 303 SUPERFAMILY DNA-binding domain 137 198 IPR016177 GO:0003677
Viun8g01922 303 Gene3D AP2/ERF domain 36 104 IPR036955 GO:0003700|GO:0006355
Viun8g01922 303 Gene3D AP2/ERF domain 137 198 IPR036955 GO:0003700|GO:0006355
Viun8g01922 303 SMART rav1_2 138 202 IPR001471 GO:0003700|GO:0006355
Viun8g01922 303 SMART rav1_2 36 108 IPR001471 GO:0003700|GO:0006355
Viun8g01922 303 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01922 Viun-Chr8 29844591 29847562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01922 32 200 AP2-EREBP Transcription Factor Family AT5G57390 73.373 1.34e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun8g01922 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01922 K09285 - gmx:100807781 514.227