Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01910 ATGGGCAAGGCTTGTGAGCTTTGCAATAACCAAGCTTCTCTCTATTGTCCCTCGGATTCCGCATTTCTCTGCGGCGACTGCGACGCCGCCGTGCACGCCGCGAACTTCCTCGTCGCTCGCCACTTCCGTCGCCGTATCTGCGCCAAATGCAACCGTTTCACCGGAATCTACATCGCCGGCGCCACCTTTCCATCCACCTGCACCGCTTGCTCGCCGGAGAAGGATCTCTCCGACGACGGCGATTCTCTCCCTTCGTCCTCCACCTGCGTCTCGAGTTCCGAGTCCTGCGCCACGAAGAAGATCAAGGCGACACGCACGGCGGCGGGGAAGAAAAGGAGGAGGAGTTTTTCGAGTTCGGTGACCGACGACGCGTCTCAGGAAGCGAAGAGGCAGCGGGAGAACGTCGGATCGGTGGAGCAGGAGCAGGAGGAGGTGTTTGCAAAATGGAGCAGAGAGATAGGTCTAGGGTTAGGGTTAGGAGAGACCGGTAACCGCGTGGCGTCGCACGCTCTGAGCGTGTGCCTCGGAAAGTGGAATTTGCTTCCGTTCAGGGTGGCCGCGGCGACGTCGTTTTGGCTGGGCCTGAGATTTTGTGGGGACAGAAGTCTGGCCACGTGGCAGAATCTGGCGAGGTTGGAGAAAATCTCTGGAGTGCCAGCTAAGCTGATTCTGGCCGCACATGCGAACCTCGCACGTGTCTTCACGCTCCCCCGCGAATTGCACGAGGGATGGGGCGAGTCATAG 744 0.5968 MGKACELCNNQASLYCPSDSAFLCGDCDAAVHAANFLVARHFRRRICAKCNRFTGIYIAGATFPSTCTACSPEKDLSDDGDSLPSSSTCVSSSESCATKKIKATRTAAGKKRRRSFSSSVTDDASQEAKRQRENVGSVEQEQEEVFAKWSREIGLGLGLGETGNRVASHALSVCLGKWNLLPFRVAAATSFWLGLRFCGDRSLATWQNLARLEKISGVPAKLILAAHANLARVFTLPRELHEGWGES 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01910 247 Coils Coil 121 141 - -
Viun8g01910 247 SMART bboxneu5 1 46 IPR000315 GO:0008270
Viun8g01910 247 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 150 - -
Viun8g01910 247 Pfam B-box zinc finger 4 33 IPR000315 GO:0008270
Viun8g01910 247 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Viun8g01910 247 MobiDBLite consensus disorder prediction 125 139 - -
Viun8g01910 247 CDD Bbox1_BBX-like 4 46 - -
Viun8g01910 247 MobiDBLite consensus disorder prediction 104 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01910 Viun-Chr8 29776397 29777517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01910 1 247 C2C2-CO-like Transcription Factor Family AT3G21150 32.677 5.23e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g01910 zf-B_box 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01910 - - pvu:PHAVU_008G254400g 398.282