Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01849 ATGAGTGTTAATTGTTCACCCTGTGCTTCCTGCAAGCTCCTGAGACGCCGTTGTTCCCAGAATTGCCTCTTTGCTCCTTATTTTCCTTCCAATGATCTTCACAACTTTGCCATGGTGCACAGGGTCTTTGGATGCAGCAATCTTACAAAAATGCTAAAGGATGTTCCCGTTGAGCAAAGAGGAGATGCAGTGAAGAGTTTAGTTTACGAGGCAAATGCAAGAGTGAGAAATCCTGTGTATGGCTGTGTTGGAATAATATCTAACTTAGAAATTCAAGTTTCTGAGTTACAAAAGCAGCTTGCAATAGCTCATGCAGAGATTCGTACCATGAAAATGCAGCAAGAATTTATGTTCATCAATGGTGGTATATCACCATGA 378 0.4127 MSVNCSPCASCKLLRRRCSQNCLFAPYFPSNDLHNFAMVHRVFGCSNLTKMLKDVPVEQRGDAVKSLVYEANARVRNPVYGCVGIISNLEIQVSELQKQLAIAHAEIRTMKMQQEFMFINGGISP 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01849 125 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Viun8g01849 125 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 113 - -
Viun8g01849 125 Coils Coil 86 113 - -
Viun8g01849 125 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01849 Viun-Chr8 29368859 29370696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01849 6 115 AS2 family AT2G30130 69.091 1.61e-54 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun8g01849 LOB 1.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01849 - - dcr:108222436 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01849 8 29368859 29370696 Viun8g01849 8 29368859 29370696 ECH