Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01832 ATGGCACTATTCACTCCGTTGAAGTTATTGCCGGCGGTGCTGGCTCTGTTTCTGGCGTTGAGCCATAAACAGAGTCTCTGTTCGACGCTCGAGAGCGAAGGTTTGGCGCTGCTGGCGTTGAAGGAGAGTGTGGTGACGGACCCGCAGGGGGCTTTATCAAGCTGGAGTGGCGAGAATGGTGACGTTATGAATCCATGCTCGTGGTTCGGTGTGGAGTGCTCTTCTCACGGTAATGTTGTGACCTTGAATTTGAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAGTTGGAATGCTGGCTCATATAAAATCAATCATTTTGCGCAACAATTCTTTCTTTGGAGAAATTCCTGAGGAGATCCTATACTTGCAGGAGTTGGAAGTCCTTGACTTGGGACATAACAACTTCAGTGGATCACTTCCATTTGATCATGGCAACATGCCATCCCTAACCACTCTTCTATTGGACAACAATTACCATCTGACCAACTTAACTCCAGAGCTGTATAAGCTCAAGATGAATTCTGAATTTCATGCTAATGAAGAACTAACCAGTGCCACCCCTACTGGAGAAGCATATGTTGGCAGATGTAGTTTATGGCACATTGGCCAACATGGGGATAGAGCAGACAGGAGGCAACTTCTCAAAGGAGCAAATGCTGCTAGTACACCCAAAATCCAAAGGCATTTTAACCATGGGATACTTAAACAATTAGCATCGCATTTCCCTTTTTCATTTCCACCAAATTTTCAGCCTTTCTCATCACCACCGTCACTTTCGCCGTCAGAAAGTCCCTCATATTCGCCATCACCTTCTCCCTCAGATAGTTTTTTCACTCCTTCGCCTGTAGTGTTACCAACTCCAGACGTATCACCACCAGCAAACACTCCTCTCTCTGTGACTACACCACCAGTTAATTGGGTTCCAGCACCTAGCCCTTCTCCATTTTCTACCCAAAGGAACACAAACAATTCCAATCAAATACATCACTCGACGATAATCTGGTCTGCAGTTGGGGGTTTCTCTTTATTGATTTTGATGTCAGCCACTATTTTTGCTTGCTTCCGAAGTAGGAAGGTTGTGACGGTTAAACCTTGGTCCACAGGATTGAGTGGCCAGCTGCAGAAAGCCTTTGTAAAAGGTGTGCCAAGTCTCAAACGAGGAGAAATTGAAGCAGCTTGTGAATATTTCAGCAACATTATCGGTTCGCTTCCTGATGGAACTGTGTATAAGGGGACTCTCTCCAGTGGAGTCGAGATAGCTGTAGCATCCTCTGCAGTGAACACAGCTCAAAAATGGTCAAAAAGCATGGAAGCTCAATTCCGAAATAAGATAGCAACATTATCTAGAGTGAATCACAAGAATTTTGTGAATCTAATTGGGTACTGTGAAGAGAATAAGCCGTTCTCAAGAATGATGGTGTTTGAGTACGCTCCAAATGGAACACTCTTTGAGCATATACACATTAGAGAAGCAGAAGAACTAAATTGGACTATGAGAATGAGGATAGCTATGGGAATAGCCTACTGCCTAGAGTATATGCATGACCTAAAACCCTCCATTTCCCATAGAAACCTGCAATCTTCATTTATATACCTTACTGAAGATTATGCTGCTAAAATATCAGATCTTAGCTTATGGAACGACGTGTGTGCTGCAAACAATGGGTCTGCAACCACACAACTCTTGGAAACATCATCAGCAGATGCCAAGGACAATGTTTACAGCTTCGGAATAATATTGTTTGAGTTGATTACGGGGAAAATCCCCATTGCAGGGAACAACGAACTTCTTGCAGATTGGGCAGCAGAATATTTAAGGTGGGGGAAATCCTTGAGAGATGTTGTTGATCCAAGACTGAACTCTTTGCAGGAAGAAGAGCTTGAAGAATGGTCTGAAGTAATGAGAAACTGTGTACAACCAGATCGAGAGAAAAGGCCAACTATGAAAGAAGTTACATCTAGACTCAAGGAAATAACAGCTATGGGGCCTGATGGAGCAAATCCAAAGGCATCACCACTTTGGTGGGCAGAAATGGCAATTACGTCCACTGATTCAAGTTGA 2067 0.4378 MALFTPLKLLPAVLALFLALSHKQSLCSTLESEGLALLALKESVVTDPQGALSSWSGENGDVMNPCSWFGVECSSHGNVVTLNLKDLCLEGTLAPEVGMLAHIKSIILRNNSFFGEIPEEILYLQELEVLDLGHNNFSGSLPFDHGNMPSLTTLLLDNNYHLTNLTPELYKLKMNSEFHANEELTSATPTGEAYVGRCSLWHIGQHGDRADRRQLLKGANAASTPKIQRHFNHGILKQLASHFPFSFPPNFQPFSSPPSLSPSESPSYSPSPSPSDSFFTPSPVVLPTPDVSPPANTPLSVTTPPVNWVPAPSPSPFSTQRNTNNSNQIHHSTIIWSAVGGFSLLILMSATIFACFRSRKVVTVKPWSTGLSGQLQKAFVKGVPSLKRGEIEAACEYFSNIIGSLPDGTVYKGTLSSGVEIAVASSAVNTAQKWSKSMEAQFRNKIATLSRVNHKNFVNLIGYCEENKPFSRMMVFEYAPNGTLFEHIHIREAEELNWTMRMRIAMGIAYCLEYMHDLKPSISHRNLQSSFIYLTEDYAAKISDLSLWNDVCAANNGSATTQLLETSSADAKDNVYSFGIILFELITGKIPIAGNNELLADWAAEYLRWGKSLRDVVDPRLNSLQEEELEEWSEVMRNCVQPDREKRPTMKEVTSRLKEITAMGPDGANPKASPLWWAEMAITSTDSS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01832 688 FunFam Inactive receptor-like serine/threonine-protein kinase 370 478 - -
Viun8g01832 688 Pfam Leucine rich repeat 102 159 IPR001611 GO:0005515
Viun8g01832 688 Gene3D Phosphorylase Kinase; domain 1 363 478 - -
Viun8g01832 688 MobiDBLite consensus disorder prediction 286 305 - -
Viun8g01832 688 SUPERFAMILY Protein kinase-like (PK-like) 391 657 IPR011009 -
Viun8g01832 688 Pfam Protein tyrosine and serine/threonine kinase 401 657 IPR001245 GO:0004672|GO:0006468
Viun8g01832 688 MobiDBLite consensus disorder prediction 255 305 - -
Viun8g01832 688 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Viun8g01832 688 SUPERFAMILY L domain-like 27 173 - -
Viun8g01832 688 Gene3D Transferase(Phosphotransferase) domain 1 479 667 - -
Viun8g01832 688 PANTHER PROTEIN MALE DISCOVERER 2 12 685 - -
Viun8g01832 688 ProSiteProfiles Protein kinase domain profile. 396 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01832 688 FunFam Nuclear pore complex protein NUP107 30 190 - -
Viun8g01832 688 Gene3D Ribonuclease Inhibitor 29 199 IPR032675 -
Viun8g01832 688 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01832 Viun-Chr8 29208883 29214582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01832 14 662 Receptor kinase-like Gene Family AT1G66830 25.104 4.11e-44 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Viun8g01832 PK_Tyr_Ser-Thr 9.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01832 - - gmx:100779427 1062.75