Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01819 ATGCCGACTCAATCCGAGTCACCCAGTAACTCACTGAGTCAACTCGCTCAGAGCGTGTTCTCCGACAACAACAGCAGCATCATGCTCGCAGCCGTTCTTTCCTTGCTCCTAGTCATCCTCTTTGTCCTCCTGCTCCACGTGTATGCCAAGTGGTTCTTATCTCAGTCGCAGTTACGTTCCCACACTCGCCGGTGGCGAACTCCGGTGACTGTCTCCGACGTTCTGGAACCTTCCCATTTCCACAGCATCAACATAGAAGCTTCACCCACCTGCACCAAGGGCCTGGATTTGGCGACAGTTTCAGCGATTCCCATGTTTGTGCACAAAACAGAGAAAACAGAAGAATTGGAATGTGTGATCTGTTTGAGCGTTATTGAGGAGGGTGAGATTGGAAGGAAATTGCCAAAGTGTGGCCACGCTTTTCATGTGGAGTGCATTGACATGTGGTTTACTTCACATTGCAATTGTCCCATTTGCAGAGCTTCTATTCTGGGGAGCGATGATTCTCAACCGGGTTCTGGTGACGTGTTGGAGGTTGTGGTTGTTACTCCTGGTTATGAGATTAGTGAGCGTGAAATCGGTGCCATGAGTGATTCTGTTCCAGAAAATTCTTCTTCTTTGTTGAGTTTCTCTTTGAAGAGATTGTTGAGTAAGGTTTTTCTGTCACCTGACCATGTAACTGGGTTGGATGCTTCACAATGA 702 0.4786 MPTQSESPSNSLSQLAQSVFSDNNSSIMLAAVLSLLLVILFVLLLHVYAKWFLSQSQLRSHTRRWRTPVTVSDVLEPSHFHSINIEASPTCTKGLDLATVSAIPMFVHKTEKTEELECVICLSVIEEGEIGRKLPKCGHAFHVECIDMWFTSHCNCPICRASILGSDDSQPGSGDVLEVVVVTPGYEISEREIGAMSDSVPENSSSLLSFSLKRLLSKVFLSPDHVTGLDASQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01819 233 FunFam RING-H2 finger protein ATL1 82 165 - -
Viun8g01819 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 168 IPR013083 -
Viun8g01819 233 Pfam Ring finger domain 117 160 IPR001841 -
Viun8g01819 233 CDD RING-H2_EL5-like 117 160 - -
Viun8g01819 233 SMART ring_2 118 159 IPR001841 -
Viun8g01819 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 168 - -
Viun8g01819 233 SUPERFAMILY RING/U-box 105 166 - -
Viun8g01819 233 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01819 Viun-Chr8 29129788 29131104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01819 27 161 Rapid Response to Elicitors AT3G16720 39.855 6.73e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01819 - - gmx:102665763 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01819 8 29129788 29131104 Viun8g01819 8 29129788 29131104 ECH
Viun6g01158 6 20993978 20996163 Viun8g01819 8 29129788 29131104 PCT