Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01812 ATGTTATGTTGTTGTGTTGATAGAACTAACAAACGTCCAAACACCAACGCACTGCCCACTACGTTGCTTATATATACCCCCAAAGGGAATCCACATACAAACGTCAATTACCGCACTTTACAAGAGTTCCAAGTGAGACATAGGGAGAGAAAGAAAATTATTATGACTTCGTGGCTCAGAGGCAAGTGCGTCGGGAGGGGCGCGTTCGGCGTTGTCAACGCGGCGGTTTCCAGAGCCGATGGTCGGGTATTCGCGGTGAAGTCCGTGGATCGTGGGGCGGGGCACCCGCGTCAGCTGGAGGCGTTGGAGAACGAGATTCGGATTCTCAAACGCCTGCCGTCGCCGCACGTCGTGGCTTATCTCGGCGACGACGTCACGTGCGAGCACGGCGGGACGGCGTCGTTCAGGAACCTTCATTTGGAGTACATGCCAGGTGGCACCGTCGCTGATCTGGACCGCGCTGACGTGGACGACAGTTTAGTGAGGCGCTACGCGTGGTGCCTCGTGAGCGCACTGCGTGACGTCCACGCGCGCGGCTTCGTGCACTGCGACGTCAAGGGGAGGAACGTGCTGCTCTCCGGCAACCGTGCCGCCGCGAAACTCGCCGATTTTGGCTCCGCGGTGGAGGTCGAAGTCCCGCGCGATTTGTTGCCACGCGGGAGTCCGATGTGGATGGCGCCAGAGGTGGTGCGCCGGGAGCGGCAGGGGCCGGAGTCAGATGTGTGGTCGCTCGGTTGCACGGTGATCGAGATTGTCAACGGGAAACCGGCGTGGGAGGATCACGGCGTGGACACGCTGAGTCGAATCGGTTACTCGGACGAGTTGCCGGAGTTTCCGAGCAAACTGTCAGAGCTGGGGAAGGATTTTCTAGAGAAGTGTCTGAGAAGAGAATGGAGAGAACGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTCTGCTTCCTTACGCCGTAGTTGAATCGTCGCCCCGTTGCGTTCTGGACTGGGTTGACTCGGAGTTCGCCGAGTCAGAACATAACGACCTTGAACAAGAAGGAGGGTGGTTAGAATTTAAGCGCAAGGAAAATTCAGTTAAAAGTAGAATTAGTAAATTAGCAACAGAATCGAGGGTAAATTGGGAAACAGAGGGTTGGGAAGCGGTGAGGGAGGTTGAGCTCAACGAAGAATCATGGGAATCAAGAACAAGAGGTGAAAGCGAAGAAGGGGTAAATTGGGAATTTAAGAATGTGGTGAGCGTAGGGAGTTGTGGGGAATGTTGGCATTGTGAAGGGGTAAATCGGGAAATAGAAGAGTTTGGTGAGGAGTGTAACAGAGGTGGTGGAGGTTGGAGGTGTGATAGGAATGGGTTGGAAAAGGTTGGTTGGGTTAAGGGAATTTTGAGGATTTACTGTTGTAAAAGTTTGATACGATGTTATTTGTTGTATTTAATGTATTTAAATACATTATGGTTTTGCTTTATTTATGGTGTGTACCTGTGTTTATTGGAAAAGTGTGTAATGCAATTGAGAGAGACAATAAATTGGGTGGATTGTAGAAGAAATTGA 1545 0.5204 MLCCCVDRTNKRPNTNALPTTLLIYTPKGNPHTNVNYRTLQEFQVRHRERKKIIMTSWLRGKCVGRGAFGVVNAAVSRADGRVFAVKSVDRGAGHPRQLEALENEIRILKRLPSPHVVAYLGDDVTCEHGGTASFRNLHLEYMPGGTVADLDRADVDDSLVRRYAWCLVSALRDVHARGFVHCDVKGRNVLLSGNRAAAKLADFGSAVEVEVPRDLLPRGSPMWMAPEVVRRERQGPESDVWSLGCTVIEIVNGKPAWEDHGVDTLSRIGYSDELPEFPSKLSELGKDFLEKCLRREWRERWSCDQLLQHPFLLPYAVVESSPRCVLDWVDSEFAESEHNDLEQEGGWLEFKRKENSVKSRISKLATESRVNWETEGWEAVREVELNEESWESRTRGESEEGVNWEFKNVVSVGSCGECWHCEGVNREIEEFGEECNRGGGGWRCDRNGLEKVGWVKGILRIYCCKSLIRCYLLYLMYLNTLWFCFIYGVYLCLLEKCVMQLRETINWVDCRRN 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01812 514 Pfam Protein kinase domain 62 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01812 514 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 49 398 - -
Viun8g01812 514 SMART serkin_6 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01812 514 SUPERFAMILY Protein kinase-like (PK-like) 31 326 IPR011009 -
Viun8g01812 514 Gene3D Transferase(Phosphotransferase) domain 1 49 382 - -
Viun8g01812 514 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Viun8g01812 514 CDD STKc_MAPKKK 57 313 - -
Viun8g01812 514 FunFam Serine threonine protein kinase putative 56 366 - -
Viun8g01812 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Viun8g01812 514 ProSiteProfiles Protein kinase domain profile. 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01812 Viun-Chr8 29066559 29068450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01812 58 400 MAP Kinase Kinase Kinase AT1G07150 57.183 2.66e-129 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun8g01812 Pkinase 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01812 - - var:108336699 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01812 8 29066559 29068450 Viun8g01812 8 29066559 29068450 ECH
Viun6g01154 6 20953393 20955056 Viun8g01812 8 29066559 29068450 PCT